Tibetan plateau gut microbiota, cross-sectional 16S study
208 gut microbiota samples from healthy individuals across six locations in China (Gannan, Naqu, Lhasa, Hongyuan, Gangcha, Tianzhu), spanning infant to elderly age groups, in a cross-sectional study of high-altitude adaptation. machine-written summary
208 samples · 208 runs · CN · Adult · 2018 · 41.8 Mbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,434 sample values (age, collection date, country, latitude, location locality, location region, longitude, sex) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 624 sample values (antibiotic exposure, health condition, health condition detail) · PMC10696028, PMC11086029 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 208 | 100% | ||||
| country | 208 | 100% | 208 | |||
| health_condition | 208 | 100% | 208 | |||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 208 | 100% | 208 | |||
| antibiotic_exposure | 208 | 100% | 208 | |||
| collection_date | 208 | 100% | 208 | |||
| health_condition_detail | 208 | 100% | 208 | |||
| latitude | 208 | 100% | 208 | |||
| longitude | 208 | 100% | 208 | |||
| sex | 208 | 100% | 208 | |||
| detailed_location | 156 | 75% | ||||
| location_locality | 156 | 75% | 156 | |||
| location_region | 30 | 14% | 30 |
- Meta-analysis identifying gut microbial biomarkers of Qinghai-Tibet Plateau populations and the functionality of microbiota-derived butyrate in high-altitude adaptation. 2024 PMID 38715346 PMC11086029 own_data
- Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits. 2023 PMID 38049420 PMC10696028 unsure
Archive description
Description the characteristics of Tibetan gut miicrobiota
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult and child and elderly by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome(208)”
- body site study.title · “Tibetan Gut Miicrobiota Metagenome”
- life stage sample.attr.host_age · “23 (n=137/208)”
- life stage sample.attr.host_age · “4 (n=28/208)”
- life stage sample.attr.host_age · “72 (n=23/208)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN06674726 | age_at_collection_days | 18262.5 | R1 | 0.70 | sample.attr.host_age | 50 |
| SAMN06674726 | antibiotic_exposure | no | R3 | 0.70 | paper.fulltext.methods | had not taken antibiotics within the 3 months before sampling |
| SAMN06674726 | collection_date | 2015-10-10 | R1 | 0.90 | biosample.attribute:collection_date | 2015-10-10 |
| SAMN06674726 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Hongyuan |
| SAMN06674726 | health_condition | healthy_control | R3 | 0.70 | paper.fulltext.methods | free of diseases and had not taken antibiotics |
| SAMN06674726 | health_condition_detail | free of diseases | R3 | 0.70 | paper.fulltext.methods | free of diseases and had not taken antibiotics |
| SAMN06674726 | latitude | 31.5100 | R1 | 0.90 | biosample.attribute:lat_lon | 31.51 N 101.51 E |
| SAMN06674726 | location_locality | Hongyuan | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Hongyuan |
| SAMN06674852 | location_region | Gansu Sheng | R1 | 0.60 | biosample.attribute:lat_lon | 36.98 N 103.13 E |
| SAMN06674726 | longitude | 101.5100 | R1 | 0.90 | biosample.attribute:lat_lon | 31.51 N 101.51 E |
| SAMN06674726 | sex | female | R1 | 0.90 | sample.attr.host_sex | female |
Sequencing
208 runs over 208 samples · mean 41.4 Mbp per run (median 41.8 Mbp, total 8.61 Gbp; 208 runs with a base count) · layout PAIRED 208 · platform ILLUMINA 208 · models Illumina MiSeq (208) · 0% of runs with a Sandpiper profile · first public 2018-04-06
Authors (19)
Yersin S first · Garneau JR · Schneeberger PHH · Osman KA · Cercamondi CI · Muhummed AM · Tschopp R · Zinsstag J · Vonaesch P last · Zhao H first · Sun L · Liu J · Shi B · Zhang Y · Qu-Zong CR · Dorji T · Wang T · Yuan H · Yang J last
Downloads
PRJNA381333.csv.gz (6.2 KB) · parquet (79.2 KB) — all 208 samples, every field with route and confidence · PRJNA381333_determinations.csv.gz (12.3 KB) — 2,058 evidence rows