Fecal phageome of healthy adults in Spain
Cross-sectional study of 7 fecal samples from healthy individuals in Spain, focused on characterizing viral (phage) sequence content of the gut. machine-written summary
7 samples · 7 runs · ES · Age unknown · 2017 · 0.48 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 41 sample values (antibiotic exposure, collection date, country, intervention, latitude, location region, longitude, timepoint) |
| ✓ Abstract / description | 7 sample values (health condition) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 7 | 100% | 7 | |||
| health_condition | 7 | 100% | 7 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 7 | 100% | 7 | |||
| detailed_location | 7 | 100% | ||||
| latitude | 7 | 100% | 7 | |||
| location_region | 7 | 100% | 7 | |||
| longitude | 7 | 100% | 7 | |||
| antibiotic_exposure | 2 | 29% | 2 | |||
| intervention | 2 | 29% | 2 | |||
| timepoint_label | 2 | 29% | 2 |
Archive description
Description of sequences corresponding to viral content of human feces of healthy individuals with special focus in phage sequences
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.82. Assay shotgun_dna.
- host study.description · “human feces of healthy individuals”
- body site study.description · “human feces of healthy individuals”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN07302946 | antibiotic_exposure | no | R1 | 0.70 | sample.name_rule:alias | PRECIP |
| SAMN07302940 | collection_date | 2014 | R1 | 0.90 | biosample.attribute:collection_date | 2014 |
| SAMN07302940 | country | ES | R1 | 0.90 | sample.attr.geo_loc_name | Spain |
| SAMN07302940 | health_condition | healthy_control | R4 | 0.50 | study.description | healthy individuals |
| SAMN07302946 | intervention | no_intervention | R1 | 0.70 | sample.name_rule:alias | PRECIP |
| SAMN07302940 | latitude | 41.3851 | R1 | 0.90 | biosample.attribute:lat_lon | 41.385064 N 2.17 E |
| SAMN07302940 | location_region | Catalonia | R1 | 0.60 | biosample.attribute:lat_lon | 41.385064 N 2.17 E |
| SAMN07302940 | longitude | 2.1700 | R1 | 0.90 | biosample.attribute:lat_lon | 41.385064 N 2.17 E |
| SAMN07302946 | timepoint_label | PRECIP | R1 | 0.70 | sample.name_rule:alias | PRECIP |
Sequencing
7 runs over 7 samples · mean 0.48 Gbp per run (median 0.48 Gbp, total 3.36 Gbp; 7 runs with a base count) · layout PAIRED 7 · platform ILLUMINA 7 · models Illumina MiSeq (7) · 0% of runs with a Sandpiper profile · first public 2017-10-02
Authors (0)
No author record.
Downloads
PRJNA392494.csv.gz (1.1 KB) · parquet (70.0 KB) — all 7 samples, every field with route and confidence · PRJNA392494_determinations.csv.gz (953 B) — 48 evidence rows