Gut microbiome of herdsmen in Sichuan and Inner Mongolia
Cross-sectional study of 18 fecal samples from healthy herdsmen in Hongyuan pasture, Sichuan (10) and Xilingol pasture, Inner Mongolia (8), comparing gut microbiome composition and function between the two pastoral regions. machine-written summary
18 samples · 18 runs · CN · Age unknown · 2020 · 2.77 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 108 sample values (collection date, country, latitude, lifestyle, location region, longitude) |
| ✓ Abstract / description | 36 sample values (health condition, health condition detail) |
| ✓ Full text | 54 sample values (antibiotic exposure, lifestyle detail, subject id) · PMC8194741 |
| ✓ Supplementary tables | 54 sample values (age, bmi, sex) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 15 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 18 | 100% | ||||
| country | 18 | 100% | 18 | |||
| health_condition | 18 | 100% | 18 | |||
| subject_id | 18 | 100% | 18 | |||
| age_at_collection_days | 18 | 100% | 18 | |||
| antibiotic_exposure | 18 | 100% | 18 | |||
| bmi | 18 | 100% | 18 | |||
| collection_date | 18 | 100% | 18 | |||
| detailed_location | 18 | 100% | ||||
| health_condition_detail | 18 | 100% | 18 | |||
| latitude | 18 | 100% | 18 | |||
| lifestyle | 18 | 100% | 18 | |||
| lifestyle_detail | 18 | 100% | 18 | |||
| location_region | 18 | 100% | 18 | |||
| longitude | 18 | 100% | 18 | |||
| sex | 18 | 100% | 18 |
- Comparison of the composition and function of the gut microbiome in herdsmen from two pasture regions, Hongyuan and Xilingol. 2021 PMID 34136190 PMC8194741 own_data
Archive description
Study on intestinal flora of pastoralists in pastures in different regions of China
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.80. Assay shotgun_dna.
- host study.title · “Fecal samples of herders”
- host study.description · “intestinal flora of pastoralists”
- body site study.title · “Fecal samples”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN11111020 | age_at_collection_days | 6940 | R2 | 0.85 | paper.supp.FSN3-9-3258-s002.xlsx[Sheet1!Age] | 19 |
| SAMN11111020 | antibiotic_exposure | no | R3 | 0.70 | paper.fulltext.methods | Volunteers did not take antibiotic‐containing drugs in the 3 months |
| SAMN11111020 | bmi | 23.15 | R2 | 0.85 | paper.supp.FSN3-9-3258-s002.xlsx[Sheet1!Body mass index (BMI)] | 23.15 |
| SAMN11111020 | collection_date | 2016-09-05 | R1 | 0.90 | biosample.attribute:collection_date | 2016-09-05 |
| SAMN11111020 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:SiChuan |
| SAMN11111020 | health_condition | healthy_control | R4 | 0.50 | paper.abstract | herdsmen from two pasture regions |
| SAMN11111020 | health_condition_detail | Healthy pastoralists; no disease mentioned | R4 | 0.50 | paper.abstract | herdsmen from two pasture regions |
| SAMN11111020 | latitude | 31.7900 | R1 | 0.90 | biosample.attribute:lat_lon | 31.79 N 102.55 E |
| SAMN11111020 | lifestyle | pastoralist | R1 | 0.85 | biosample.attribute:host | host: Herder |
| SAMN11111020 | lifestyle_detail | traditional herdsmen | R3 | 0.70 | paper.fulltext.methods | 18 traditional herdsmen participated in this work |
| SAMN11111020 | location_region | Sichuan | R1 | 0.85 | biosample.attribute:geo_loc_name | China:SiChuan |
| SAMN11111020 | longitude | 102.5500 | R1 | 0.90 | biosample.attribute:lat_lon | 31.79 N 102.55 E |
| SAMN11111020 | sex | male | R2 | 0.85 | paper.supp.FSN3-9-3258-s002.xlsx[Sheet1!Gender] | male |
| SAMN11111020 | subject_id | SAMN11111020 | R3 | 0.70 | design.one_sample_per_subject:fulltext | A total of 18 traditional herdsmen participated in this work, with ten subjects from the Sichuan Hongyuan Ranch |
Sequencing
18 runs over 18 samples · mean 2.79 Gbp per run (median 2.77 Gbp, total 50.13 Gbp; 18 runs with a base count) · layout PAIRED 18 · platform ILLUMINA 18 · models Illumina HiSeq 2000 (18) · 83% of runs with a Sandpiper profile · first public 2020-04-14
Downloads
PRJNA526822.csv.gz (1.6 KB) · parquet (72.3 KB) — all 18 samples, every field with route and confidence · PRJNA526822_determinations.csv.gz (2.9 KB) — 252 evidence rows