Gut metagenome, healthy adults, Shanghai, tea intervention
2 gut metagenome samples from healthy adult controls in Shanghai, China, collected as part of an intervention study examining Pu-erh tea theabrownin's effects on gut microbiota and bile-acid metabolism. machine-written summary
2 samples · 2 runs · CN · Adult · 2019 · 13.69 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 8 sample values (collection date, country, location region, timepoint) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 6 sample values (health condition, health condition detail, sex) · PMC6823360 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 2 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 2 | 100% | ||||
| country | 2 | 100% | 2 | |||
| health_condition | 2 | 100% | 2 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 2 | 100% | 2 | |||
| detailed_location | 2 | 100% | ||||
| health_condition_detail | 2 | 100% | 2 | |||
| location_region | 2 | 100% | 2 | |||
| sex | 2 | 100% | 2 | |||
| timepoint_label | 2 | 100% | 2 |
- Theabrownin from Pu-erh tea attenuates hypercholesterolemia via modulation of gut microbiota and bile acid metabolism. 2019 PMID 31672964 PMC6823360 own_data
Archive description
metagenom shotgun sequencing, human gut
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “gut metagenome”
- body site study.description · “shotgun sequencing, human gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN12739624 | collection_date | 2017-02-03 | R1 | 0.90 | biosample.attribute:collection_date | 2017-02-03T08:15:00Z |
| SAMN12739624 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Shanghai |
| SAMN12739624 | health_condition | healthy_control | R3 | 0.70 | paper.fulltext.methods | Thirteen healthy male volunteers were enrolled in this study |
| SAMN12739624 | health_condition_detail | healthy male volunteers | R3 | 0.70 | paper.fulltext.methods | Thirteen healthy male volunteers were enrolled in this study |
| SAMN12739624 | location_region | Shanghai | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Shanghai |
| SAMN12739624 | sex | male | R3 | 0.70 | paper.fulltext.methods | Thirteen healthy male volunteers were enrolled in this study |
| SAMN12739624 | timepoint_label | Pre-PTea | R1 | 0.70 | sample.name_rule:alias | Pre-PTea |
Sequencing
2 runs over 2 samples · mean 13.69 Gbp per run (median 13.69 Gbp, total 27.37 Gbp; 2 runs with a base count) · layout PAIRED 2 · platform ILLUMINA 2 · models HiSeq X Ten (2) · 100% of runs with a Sandpiper profile · first public 2019-09-13
Authors (27)
Huang F first · Zheng X · Ma X · Jiang R · Zhou W · Zhou S · Zhang Y · Lei S · Wang S · Kuang J · Han X · Wei M · You Y · Li M · Li Y · Liang D · Liu J · Chen T · Yan C · Wei R · Rajani C · Shen C · Xie G · Bian Z · Li H · Zhao A · Jia W last
Downloads
PRJNA565268.csv.gz (950 B) · parquet (69.6 KB) — all 2 samples, every field with route and confidence · PRJNA565268_determinations.csv.gz (820 B) — 14 evidence rows