Gut microbiome of healthy Thai adults, cross-sectional
Whole metagenome shotgun sequencing of 10 gut microbiome samples from healthy Thai adults, in a cross-sectional study examining gut bacterial taxonomy and carbohydrate metabolism genes. machine-written summary
10 samples · 10 runs · TH · Adult · 2021 · 16.64 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 50 sample values (collection date, country, latitude, longitude, timepoint) |
| ✓ Abstract / description | 20 sample values (health condition, health condition detail) |
| ✓ Full text | 30 sample values (location locality, location site, subject id) · PMC7996147 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 9 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 10 | 100% | ||||
| country | 10 | 100% | 10 | |||
| health_condition | 10 | 100% | 10 | |||
| subject_id | 10 | 100% | 10 | |||
| collection_date | 10 | 100% | 10 | |||
| detailed_location | 10 | 100% | ||||
| health_condition_detail | 10 | 100% | 10 | |||
| latitude | 10 | 100% | 10 | |||
| location_locality | 10 | 100% | 10 | |||
| location_site | 10 | 100% | 10 | |||
| longitude | 10 | 100% | 10 | |||
| timepoint_label | 10 | 100% | 10 |
- Analysis of Human Gut Microbiome: Taxonomy and Metabolic Functions in Thai Adults. 2021 PMID 33668840 PMC7996147 own_data
- Gut microbiota of healthy Asians and their discriminative features revealed by metagenomics approach. 2023 PMID 37457869 PMC10338424 unsure
- Modeling diet-gut microbiome interactions and prebiotic responses in Thai adults. 2026 PMID 41605932 PMC12966491 unsure
Archive description
Whole metagenome shotgun (WMGS) sequencing data of the gut microbiome of Thai adults
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Gut microbiome of Thai”
- body site study.description · “data of the gut microbiome of Thai”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- life stage study.title · “microbiome of Thai adults”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN13632795 | collection_date | 2019 | R1 | 0.90 | biosample.attribute:collection_date | 2019 |
| SAMN13632795 | country | TH | R1 | 0.90 | sample.attr.geo_loc_name | Thailand |
| SAMN13632795 | health_condition | healthy_control | R4 | 0.50 | paper.abstract | healthy Thai adults |
| SAMN13632795 | health_condition_detail | healthy adults | R4 | 0.50 | paper.abstract | healthy Thai adults |
| SAMN13632795 | latitude | 13.4500 | R1 | 0.90 | biosample.attribute:lat_lon | 13.45 N 100.31 E |
| SAMN13632795 | location_locality | Bangkok | R3 | 0.70 | paper.fulltext.methods | Thai adults living in Bangkok and near the capital |
| SAMN13632795 | location_site | King Chulalongkorn Memorial Hospital | R3 | 0.70 | paper.fulltext.methods | recruited at King Chulalongkorn Memorial Hospital, Bangkok, Thailand |
| SAMN13632795 | longitude | 100.3100 | R1 | 0.90 | biosample.attribute:lat_lon | 13.45 N 100.31 E |
| SAMN13632795 | subject_id | SAMN13632795 | R3 | 0.70 | design.one_sample_per_subject:fulltext | the metagenomic DNA isolated from the fecal samples of ten participants selected from the 56 participants were sequenced |
| SAMN13632795 | timepoint_label | V0D0 | R1 | 0.70 | sample.name_rule:library_names | A_461K_BV0D0 |
Sequencing
10 runs over 10 samples · mean 16.50 Gbp per run (median 16.64 Gbp, total 164.99 Gbp; 10 runs with a base count) · layout PAIRED 10 · platform ILLUMINA 10 · models HiSeq X Ten (10) · 90% of runs with a Sandpiper profile · first public 2021-03-01
Authors (32)
Raethong N first · Nakphaichit M · Suratannon N · Sathitkowitchai W · Weerapakorn W · Keawsompong S · Vongsangnak W last · Taha SFM first · Bhassu S · Omar H · Raju CS · Rajamanikam A · Govind SKP · Mohamad SB last · Argentini C first · Lugli GA · Tarracchini C · Fontana F · Mancabelli L · Viappiani A · Anzalone R · Angelini L · Alessandri G · Longhi G · Bianchi MG · Taurino G · Bussolati O · Milani C · van Sinderen D · Turroni F · Ventura M last · Patumcharoenpol P
Downloads
PRJNA637175.csv.gz (1.2 KB) · parquet (71.0 KB) — all 10 samples, every field with route and confidence · PRJNA637175_determinations.csv.gz (1.7 KB) — 100 evidence rows