FMT Before and After in Ulcerative Colitis, South Korea
1 sample from an adult with ulcerative colitis in South Korea, collected before and after fecal microbiota transplantation as part of an intervention study. machine-written summary
68 samples · 68 runs · Adult · 2024 · 9.15 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 136 sample values (subject id, timepoint) |
| ✓ Abstract / description | 136 sample values (health condition, health condition detail) |
| ○ Full text | read; no usable statement or table · PMC9474483 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Faecal microbiota transplantation design single_arm_before_after · population ulcerative_colitis · Fecal microbiota transplantation in ulcerative colitis patients
“Before and after fecal microbiota transplantation” — study.title (study level; per-sample arms are in the intervention column below)
longitudinal — not resolved
10 of 10 people sampled more than once (68 samples; median 7, up to 7 per person). Schedule stated by the source: “Fecal samples at T0 (day before FMT), then T1, T7, T28, T35, T58 days after FMT” (time origin: intervention_start); stated follow-up 58 d.
Genera, mean relative abundance over 1 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 68 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 68 | 100% | 68 | |||
| subject_id | 68 | 100% | 68 | |||
| health_condition_detail | 68 | 100% | 68 | |||
| timepoint_label | 68 | 100% | 68 |
- Exploration of Potential Gut Microbiota-Derived Biomarkers to Predict the Success of Fecal Microbiota Transplantation in Ulcerative Colitis: A Prospective Cohort in Korea. 2022 PMID 35975640 PMC9474483 own_data
Archive description
Before and after fecal microbiota transplantation in ulcerative colitis patients
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Before and after fecal microbiota transplantation in”
- body site study.description · “Before and after fecal microbiota transplantation in”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SRR12326881 | health_condition | ulcerative_colitis | R4 | 0.50 | study.title | ulcerative colitis patients |
| SRR12326881 | health_condition_detail | Ulcerative colitis patients undergoing FMT | R4 | 0.50 | study.title | ulcerative colitis patients |
| SRR12326881 | subject_id | UC02 | R1 | 0.70 | sample.name_rule:library_name | UC02_2-3M_1 |
| SRR12326881 | timepoint_label | 2-3M | R1 | 0.70 | sample.name_rule:library_name | UC02_2-3M_1 |
Sequencing
68 runs over 68 samples · mean 9.70 Gbp per run (median 9.15 Gbp, total 659.59 Gbp; 68 runs with a base count) · layout PAIRED 68 · platform ILLUMINA 68 · models Illumina NovaSeq 6000 (68) · 90% of runs with a Sandpiper profile · first public 2024-07-02
Authors (0)
No author record.
Downloads
PRJNA647221.csv.gz (2.3 KB) · parquet (71.4 KB) — all 68 samples, every field with route and confidence · PRJNA647221_determinations.csv.gz (2.5 KB) — 272 evidence rows