Gut microbiome in NZ Pacific and European women
383 fecal metagenome samples from women in Auckland, New Zealand (Pacific and NZ European ethnicities), examining associations between gut microbiota composition and diet, BMI, and body fat in a cross-sectional design. machine-written summary
383 samples · 383 runs · NZ · Adult · 2021 · 2.80 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,915 sample values (collection date, country, latitude, location region, longitude) |
| ✓ Abstract / description | 766 sample values (health condition detail, location locality) |
| ✓ Full text | 766 sample values (health condition, sex) · PMC9980675 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 344 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 383 | 100% | ||||
| country | 383 | 100% | 383 | |||
| health_condition | 383 | 100% | 383 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 383 | 100% | 383 | |||
| detailed_location | 383 | 100% | ||||
| health_condition_detail | 383 | 100% | 383 | |||
| latitude | 383 | 100% | 383 | |||
| location_locality | 383 | 100% | 383 | |||
| location_region | 383 | 100% | 383 | |||
| longitude | 383 | 100% | 383 | |||
| sex | 383 | 100% | 383 |
- The fecal microbiotas of women of Pacific and New Zealand European ethnicities are characterized by distinctive enterotypes that reflect dietary intakes and fecal water content. 2023 PMID 36799472 PMC9980675 own_data
Archive description
The study aims to understand how diet, physical activity, sleep and taste affect the gut bacteria of New Zealand's European women and Pacific women and how this may be linked to long-term health and a healthy body weight.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by opus_adjudicated with confidence 0.55. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.description · “affect the gut bacteria”
- life stage study.description · “European women and Pacific women”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN15824613 | collection_date | 2016 | R1 | 0.90 | biosample.attribute:collection_date | 2016 |
| SAMN15824613 | country | NZ | R1 | 0.90 | sample.attr.geo_loc_name | New Zealand |
| SAMN15824613 | health_condition | healthy_control | R3 | 0.70 | paper.fulltext.methods | free from any chronic disease, aged 18–45 years |
| SAMN15824613 | health_condition_detail | mixed_case_control: obese vs nonobese women; no explicit disease diagnosis stated | R4 | 0.40 | paper.abstract | Associations with BMI (obese, nonobese) |
| SAMN15824613 | latitude | -36.8400 | R1 | 0.90 | biosample.attribute:lat_lon | 36.84 S 174.76 E |
| SAMN15824613 | location_locality | Auckland | R4 | 0.50 | paper.abstract | resident in Auckland New Zealand |
| SAMN15824613 | location_region | Auckland | R1 | 0.60 | biosample.attribute:lat_lon | 36.84 S 174.76 E |
| SAMN15824613 | longitude | 174.7600 | R1 | 0.90 | biosample.attribute:lat_lon | 36.84 S 174.76 E |
| SAMN15824613 | sex | female | R3 | 0.70 | paper.fulltext.abstract | fecal microbiota of 286 women, resident in Auckland |
Sequencing
383 runs over 383 samples · mean 2.79 Gbp per run (median 2.80 Gbp, total 1,068.40 Gbp; 383 runs with a base count) · layout PAIRED 383 · platform ILLUMINA 383 · models Illumina HiSeq 2500 (383) · 90% of runs with a Sandpiper profile · first public 2021-09-02
Authors (10)
Renall N first · Lawley B · Vatanen T · Merz B · Douwes J · Corbin M · Te Morenga L · Kruger R · Breier BH · Tannock GW last
Downloads
PRJNA657309.csv.gz (9.5 KB) · parquet (84.2 KB) — all 383 samples, every field with route and confidence · PRJNA657309_determinations.csv.gz (17.9 KB) — 3,447 evidence rows