Gut Microbiome in Parkinson's Disease
420 gut microbiome samples, including 319 from healthy controls and 101 from individuals with a neurological/psychiatric condition; location, design, and intervention details are not specified. machine-written summary
420 samples · 420 runs · US · Age unknown · 2022 · 3.48 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,680 sample values (health condition, health condition detail, sex, subject id) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 420 sample values (collection date) · PMC10538421 |
| – Supplementary tables | no supplementary tables available (or none open access) |
| ✓ External resources | 420 sample values (country) · from GMrepo v3 |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 420 | 100% | 420 | |||
| health_condition | 420 | 100% | 420 | |||
| subject_id | 420 | 100% | 420 | |||
| collection_date | 420 | 100% | 420 | |||
| health_condition_detail | 420 | 100% | 420 | |||
| sex | 420 | 100% | 420 |
- Metagenomics of the Gut Microbiome in Parkinson's Disease: Prodromal Changes. 2023 PMID 37314861 PMC10538421 own_data
Archive description
To be updated
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.title · “The Gut Microbiome in Parkinson's Disease”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN16657242 | collection_date | 2019/2021 | R3 | 0.70 | paper.body.methods_results | 269 participants provided stool during the first phase of the collection (2019–2020), and 151 provided stool during the 2nd phase of the collection (2020–2021) |
| SAMN16657242 | country | US | R2 | 0.75 | external.gmrepo source | country: United States of America |
| SAMN16657242 | health_condition | healthy_control | R1 | 0.85 | biosample.attribute:subject_is_affected | No |
| SAMN16657242 | health_condition_detail | subject is affected: no | R1 | 0.85 | sample.attr.subject_is_affected | No |
| SAMN16657242 | sex | female | R1 | 0.90 | sample.attr.sex | female |
| SAMN16657242 | subject_id | 3486141 | R1 | 0.85 | sample.attr.gap_subject_id | 3486141 |
Sequencing
420 runs over 420 samples · mean 3.80 Gbp per run (median 3.48 Gbp, total 1,596.71 Gbp; 420 runs with a base count) · layout PAIRED 420 · platform ILLUMINA 420 · models Illumina NovaSeq 6000 (420) · 0% of runs with a Sandpiper profile · first public 2022-08-14 – 2023-06-07
Authors (0)
No author record.
Downloads
PRJNA671239.csv.gz (11.6 KB) · parquet (86.5 KB) — all 420 samples, every field with route and confidence · PRJNA671239_determinations.csv.gz (16.9 KB) — 2,520 evidence rows