Gut microbiome in children with anorexia, Shenzhen, China
100 gut metagenome samples from children in Shenzhen, China, comparing those with another disease condition (50 samples) to healthy controls (50 samples). machine-written summary
100 samples · 100 runs · CN · Child · 2023 · 6.68 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 350 sample values (collection date, country, health condition, location locality) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| ✓ External resources | 182 sample values (antibiotic exposure, health condition, health condition detail) · from GMrepo v3 |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 93 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 100 | 100% | ||||
| country | 100 | 100% | 100 | |||
| health_condition | 100 | 100% | 50 | 50 | ||
| subject_id | 0 | 0% | ||||
| collection_date | 100 | 100% | 100 | |||
| detailed_location | 100 | 100% | ||||
| health_condition_detail | 100 | 100% | 100 | |||
| location_locality | 100 | 100% | 100 | |||
| antibiotic_exposure | 32 | 32% | 32 |
Archive description
This study focuses on the features of microbiome in children with anorexia.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_child_over_36m”
- body site study.title · “The human gut microbiome Metagenome study”
- body site external_curation.infant_catalog · “body_site_call gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_child_over_36m”
- life stage study.title · “Metagenome study for children with anorexia”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN16746067 | antibiotic_exposure | no | R2 | 0.75 | external.gmrepo source | Recent_Antibiotics_Use: No |
| SAMN16746066 | collection_date | 2019-10-26 | R1 | 0.90 | biosample.attribute:collection_date | 2019-10-26 |
| SAMN16746066 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Shenzhen |
| SAMN16746116 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:alias | H01 |
| SAMN16746066 | health_condition | other_disease | R2 | 0.75 | external.gmrepo source | phenotype: Anorexia |
| SAMN16746066 | health_condition_detail | Anorexia | R2 | 0.75 | external.gmrepo source | phenotype: Anorexia |
| SAMN16746066 | location_locality | Shenzhen | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Shenzhen |
Sequencing
100 runs over 100 samples · mean 6.60 Gbp per run (median 6.68 Gbp, total 660.35 Gbp; 100 runs with a base count) · layout PAIRED 100 · platform ILLUMINA 100 · models Illumina NovaSeq 6000 (100) · 93% of runs with a Sandpiper profile · first public 2023-12-02
Authors (0)
No author record.
Downloads
PRJNA674716.csv.gz (3.6 KB) · parquet (74.1 KB) — all 100 samples, every field with route and confidence · PRJNA674716_determinations.csv.gz (5.2 KB) — 532 evidence rows