Human gut metagenome study, 24 samples
This project includes 24 gut metagenome samples. No information on country, age, health condition, intervention, or study design is provided in the available sources. machine-written summary
24 samples · 24 runs · CN · Age unknown · 2021 · 12.05 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 48 sample values (collection date, country) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 24 | 100% | 24 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 24 | 100% | 24 |
Archive description
Metagenomic analysis of clinical gastric juice
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.description · “Metagenomic analysis of clinical gastric juice”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN23459525 | collection_date | 2020-08-25 | R1 | 0.85 | biosample.attribute:collection_date | 2020-08-25T15:21:11Z |
| SAMN23459525 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Shanghai |
Sequencing
24 runs over 24 samples · mean 12.24 Gbp per run (median 12.05 Gbp, total 293.87 Gbp; 24 runs with a base count) · layout PAIRED 24 · platform ILLUMINA 24 · models Illumina HiSeq X (24) · 88% of runs with a Sandpiper profile · first public 2021-11-28
Authors (0)
No author record.
Downloads
PRJNA783956.csv.gz (1.4 KB) · parquet (69.2 KB) — all 24 samples, every field with route and confidence · PRJNA783956_determinations.csv.gz (747 B) — 48 evidence rows