HiFi metagenome sequencing of a healthy Korean adult's gut
One fecal sample from a healthy adult omnivore volunteer in Seoul, South Korea, sequenced using PacBio HiFi long-read technology; cross-sectional design. machine-written summary
1 samples · 1 runs · KR · Adult · 2022 · 29.59 Gbp / sample · cohort HiFi metagenomic sequencing enables assembly of ac
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 6 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ✓ Abstract / description | 3 sample values (health condition, health condition detail, subject id) |
| ○ Full text | read; no usable statement or table · PMC9606305 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 1 | 100% | ||||
| country | 1 | 100% | 1 | |||
| health_condition | 1 | 100% | 1 | |||
| subject_id | 1 | 100% | 1 | |||
| collection_date | 1 | 100% | 1 | |||
| detailed_location | 1 | 100% | ||||
| health_condition_detail | 1 | 100% | 1 | |||
| latitude | 1 | 100% | 1 | |||
| location_locality | 1 | 100% | 1 | |||
| location_region | 1 | 100% | 1 | |||
| longitude | 1 | 100% | 1 |
- HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota. 2022 PMID 36289209 PMC9606305 own_data
- Species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping with Argo. 2025 PMID 39966439 PMC11836353 unsure
Archive description
PacBio HiFi sequencing read data on a fecal sample of a healthy Korean omnivore volunteer with Seqeul II platform.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “and Uncultured Human Gut Microbiota”
- body site study.description · “data on a fecal sample of a”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- life stage study.description · “healthy Korean omnivore volunteer with Seqeul II”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN25050908 | collection_date | 2021 | R1 | 0.90 | biosample.attribute:collection_date | 2021 |
| SAMN25050908 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | South Korea:Seoul |
| SAMN25050908 | health_condition | healthy_control | R4 | 0.50 | study.description | healthy Korean omnivore volunteer |
| SAMN25050908 | health_condition_detail | healthy volunteer | R4 | 0.50 | study.description | healthy Korean omnivore volunteer |
| SAMN25050908 | latitude | 37.5638 | R1 | 0.90 | biosample.attribute:lat_lon | 37.5637563 N 126.937546 E |
| SAMN25050908 | location_locality | Seoul | R1 | 0.85 | biosample.attribute:geo_loc_name | South Korea:Seoul |
| SAMN25050908 | location_region | Seoul | R1 | 0.60 | biosample.attribute:lat_lon | 37.5637563 N 126.937546 E |
| SAMN25050908 | longitude | 126.9375 | R1 | 0.90 | biosample.attribute:lat_lon | 37.5637563 N 126.937546 E |
| SAMN25050908 | subject_id | SAMN25050908 | R4 | 0.65 | design.one_sample_per_subject:description | PacBio HiFi sequencing read data on a fecal sample of a healthy Korean omnivore volunteer |
Sequencing
1 runs over 1 samples · mean 29.59 Gbp per run (median 29.59 Gbp, total 29.59 Gbp; 1 runs with a base count) · layout SINGLE 1 · platform PACBIO_SMRT 1 · models Sequel II (1) · 0% of runs with a Sandpiper profile · first public 2022-02-18
Downloads
PRJNA798244.csv.gz (910 B) · parquet (70.0 KB) — all 1 samples, every field with route and confidence · PRJNA798244_determinations.csv.gz (815 B) — 9 evidence rows