Microbiome in Tibetan adults with coronary heart disease
45 gut metagenome samples from adult subjects in Qinghai, China, cross-sectional design, comparing healthy controls (27) to individuals with cardiometabolic conditions (18), including coronary heart disease. machine-written summary
45 samples · 45 runs · CN · Adult · 2023 · 12.87 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 225 sample values (collection date, country, latitude, location region, longitude) |
| ✓ Abstract / description | 45 sample values (subject id) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| ✓ External resources | 90 sample values (health condition, health condition detail) · from GMrepo v3 |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 38 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 45 | 100% | ||||
| country | 45 | 100% | 45 | |||
| health_condition | 45 | 100% | 45 | |||
| subject_id | 45 | 100% | 45 | |||
| collection_date | 45 | 100% | 45 | |||
| detailed_location | 45 | 100% | ||||
| health_condition_detail | 45 | 100% | 45 | |||
| latitude | 45 | 100% | 45 | |||
| location_region | 45 | 100% | 45 | |||
| longitude | 45 | 100% | 45 |
- Structural and functional dysbiosis of gut microbiota in Tibetan subjects with coronary heart disease. 2022 PMID 36115504 own_data
Archive description
Metagenomic analysis reveals the gut microbiome of Tibetan subjects with coronary heart disease
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “the gut microbiome metagenomic of”
- body site study.description · “analysis reveals the gut microbiome of Tibetan”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN26814870 | collection_date | 2018-12-15 | R1 | 0.90 | biosample.attribute:collection_date | 2018-12-15 |
| SAMN26814870 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Qinghai |
| SAMN26814870 | health_condition | cardiometabolic_other | R2 | 0.75 | external.gmrepo source | phenotype: Coronary Disease |
| SAMN26814870 | health_condition_detail | Coronary Disease | R2 | 0.75 | external.gmrepo source | phenotype: Coronary Disease |
| SAMN26814870 | latitude | 36.3700 | R1 | 0.90 | biosample.attribute:lat_lon | 36.37 N 101.44 E |
| SAMN26814870 | location_region | Qinghai | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Qinghai |
| SAMN26814870 | longitude | 101.4400 | R1 | 0.90 | biosample.attribute:lat_lon | 36.37 N 101.44 E |
| SAMN26814870 | subject_id | SAMN26814870 | R4 | 0.60 | design.one_sample_per_subject:abstract | 14 CHD patients, 13 patients with non-stenosis coronary heart disease (NCHD), and 18 healthy controls (HT) |
Sequencing
45 runs over 45 samples · mean 13.18 Gbp per run (median 12.87 Gbp, total 593.16 Gbp; 45 runs with a base count) · layout PAIRED 45 · platform ILLUMINA 45 · models Illumina HiSeq 2000 (45) · 84% of runs with a Sandpiper profile · first public 2023-06-05
Authors (0)
No author record.
Downloads
PRJNA818062.csv.gz (2.1 KB) · parquet (71.7 KB) — all 45 samples, every field with route and confidence · PRJNA818062_determinations.csv.gz (3.2 KB) — 360 evidence rows