Gut microbiota of ileostomy samples in CRC patients
Shotgun metagenomics study of 31 ileostomy samples from colorectal cancer patients profiling gut microbiota composition. machine-written summary
31 samples · 31 runs · Age unknown · 2022 · 13.47 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ○ Sequence archive | records read; no usable sample values |
| ✓ Abstract / description | 62 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Other administered intervention (see intervention_detail) design observational_with_procedure · population colorectal_cancer · Ileostomy sampling across fed/fasted states in CRC patients
“Gut microbiota profile in ileostomy samples from CRC Patients” — study.title (study level; per-sample arms are in the intervention column below)
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 31 | 100% | 31 | |||
| subject_id | 0 | 0% | ||||
| health_condition_detail | 31 | 100% | 31 |
Archive description
We investigated the inherent instability and temporal dynamics in the human small intestinal microbiota within individuals, and the contribution of fed and fasted states in microbial diversity and metabolism.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by curator_audit with confidence 0.55. Assay shotgun_dna.
- host study_title · “ileostomy samples from CRC Patients”
- host runs.scientific_name · “human gut metagenome (31)”
- body site study_title · “ileostomy samples from CRC Patients”
- body site runs.scientific_name · “human gut metagenome (31)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SRR18751094 | health_condition | colorectal_cancer | R4 | 0.50 | study.title | ileostomy samples from CRC Patients |
| SRR18751094 | health_condition_detail | CRC patients (ileostomy samples) | R4 | 0.50 | study.title | ileostomy samples from CRC Patients |
Sequencing
31 runs over 31 samples · mean 13.59 Gbp per run (median 13.47 Gbp, total 421.28 Gbp; 31 runs with a base count) · layout PAIRED 31 · platform ILLUMINA 31 · models Illumina NovaSeq 6000 (31) · 87% of runs with a Sandpiper profile · first public 2022-11-02
Authors (0)
No author record.
Downloads
PRJNA825696.csv.gz (1.5 KB) · parquet (69.3 KB) — all 31 samples, every field with route and confidence · PRJNA825696_determinations.csv.gz (644 B) — 62 evidence rows