Gut microbiome, milk-intolerant vs milk drinkers, Italy
25 gut metagenome samples from a case-control study of non-habitual milk consumers with gastro-intestinal discomfort (NHMC) versus habitual milk consumers without discomfort (HMC) following cow's milk consumption. machine-written summary
25 samples · 25 runs · Age unknown · 2022 · 8.96 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 100 sample values (collection date, health condition, health condition detail, subject id) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC10948488 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 24 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 25 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 25 | 100% | 25 | |||
| subject_id | 25 | 100% | 25 | |||
| collection_date | 25 | 100% | 25 | |||
| health_condition_detail | 25 | 100% | 25 |
- Relationships between diet and gut microbiome in an Italian and Dutch cohort: does the dietary protein to fiber ratio play a role? 2024 PMID 38151533 PMC10948488 own_data
Archive description
gut metagenome of 19 non-habitual milk consumers with gastro-intestinal discomfort upon cow's milk consumption (NHMC) and 20 habitual milk consumers without GID (HMC), participating in a gut permeability and a milk load
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- host run.host_tax_id · “9606”
- body site study.title · “gut metagenome of subjects with GID”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN27917751 | collection_date | 2020 | R1 | 0.90 | biosample.attribute:collection_date | 2020 |
| SAMN27917751 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:attribute | HMC subject D102 |
| SAMN27917751 | health_condition_detail | HMC | R1 | 0.70 | sample.name_rule:attribute | HMC subject D102 |
| SAMN27917751 | subject_id | D102 | R1 | 0.70 | sample.name_rule:attribute | HMC subject D102 |
Sequencing
25 runs over 25 samples · mean 9.69 Gbp per run (median 8.96 Gbp, total 242.19 Gbp; 25 runs with a base count) · layout PAIRED 25 · platform ILLUMINA 25 · models Illumina NovaSeq 6000 (25) · 96% of runs with a Sandpiper profile · first public 2022-04-28
Authors (6)
Tagliamonte S first · Puhlmann ML · De Filippis F · Guerville M · Ercolini D · Vitaglione P last
Downloads
PRJNA832737.csv.gz (1.5 KB) · parquet (69.8 KB) — all 25 samples, every field with route and confidence · PRJNA832737_determinations.csv.gz (1.3 KB) — 100 evidence rows