Microbiota in sepsis-induced cardiomyopathy, cross-sectional
Cross-sectional study of 31 fecal samples from patients with sepsis-induced cardiomyopathy (16 elderly, 15 adult), examining gut microbial community dysbiosis associated with the condition. machine-written summary
31 samples · 31 runs · Adult · 2023 · 12.17 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 62 sample values (age, sex) |
| ✓ Abstract / description | 93 sample values (health condition, health condition detail, subject id) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 28 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 31 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 31 | 100% | 31 | |||
| subject_id | 31 | 100% | 31 | |||
| age_at_collection_days | 31 | 100% | 31 | |||
| health_condition_detail | 31 | 100% | 31 | |||
| sex | 31 | 100% | 31 |
- Gut microbiota dysbiosis is associated with sepsis-induced cardiomyopathy in patients: A case-control study. 2023 PMID 36319439 own_data
Archive description
Analysis of gut microbial community in feces of patients with septic myocardium
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult and elderly by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.description · “feces of patients with septic myocardium”
- life stage study.title · “patients”
- life stage sample.attr.age · “82 (n=18/31)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN29157877 | age_at_collection_days | 26298.0 | R1 | 0.70 | sample.attr.age | 72 |
| SAMN29157877 | health_condition | other_disease | R4 | 0.50 | study.title | sepsis-induced cardiomyopathy in patients |
| SAMN29157877 | health_condition_detail | Sepsis-induced cardiomyopathy | R4 | 0.50 | study.title | sepsis-induced cardiomyopathy in patients |
| SAMN29157877 | sex | female | R1 | 0.90 | sample.attr.sex | female |
| SAMN29157877 | subject_id | SAMN29157877 | R4 | 0.60 | design.one_sample_per_subject:abstract | SICM patients (n = 15) and sepsis-uninduced cardiomyopathy patients (SNICM, n = 16) |
Sequencing
31 runs over 31 samples · mean 13.22 Gbp per run (median 12.17 Gbp, total 409.82 Gbp; 31 runs with a base count) · layout PAIRED 31 · platform ILLUMINA 31 · models Illumina NovaSeq 6000 (31) · 90% of runs with a Sandpiper profile · first public 2023-10-29
Authors (0)
No author record.
Downloads
PRJNA850128.csv.gz (1.9 KB) · parquet (70.8 KB) — all 31 samples, every field with route and confidence · PRJNA850128_determinations.csv.gz (1.7 KB) — 155 evidence rows