In vitro phage therapy on human fecal samples, Shenzhen
18 human fecal samples underwent 24-hour in vitro batch culture in Shenzhen, China, comparing phage cocktail treatment versus heat-killed phage treatment, in an intervention study design. machine-written summary
18 samples · 18 runs · CN · Age unknown · 2023 · 0.95 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 72 sample values (collection date, country, location locality, subject id) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Bacteriophage therapy design non_randomized_controlled · In vitro fecal batch culture with phage cocktail vs heat-killed phage
“under phage cocktail treatment or heat-killed phage treatment” — bioproject.description (study level; per-sample arms are in the intervention column below)
longitudinal — not resolved
3 of 3 people sampled more than once (18 samples; median 6, up to 6 per person).
Genera, mean relative abundance over 16 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 18 | 100% | 18 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 18 | 100% | 18 | |||
| collection_date | 18 | 100% | 18 | |||
| detailed_location | 18 | 100% | ||||
| location_locality | 18 | 100% | 18 |
Archive description
The raw sequencing reads of 18 samples of human feces with a 24-hours batch culture in vitro under phage cocktail treatment or heat-killed phage treatment.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site study.title · “human feces with a 24-hours batch culture”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN30175136 | collection_date | 2020 | R1 | 0.90 | biosample.attribute:collection_date | 2020 |
| SAMN30175136 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Shenzhen |
| SAMN30175136 | location_locality | Shenzhen | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Shenzhen |
| SAMN30175136 | subject_id | Donor1 | R1 | 0.70 | sample.name_rule:alias | Donor1_HKP_#1 |
Sequencing
18 runs over 18 samples · mean 0.94 Gbp per run (median 0.95 Gbp, total 16.91 Gbp; 18 runs with a base count) · layout PAIRED 18 · platform ILLUMINA 18 · models Illumina HiSeq 1500 (18) · 89% of runs with a Sandpiper profile · first public 2023-01-11
Authors (0)
No author record.
Downloads
PRJNA866369.csv.gz (1.2 KB) · parquet (69.4 KB) — all 18 samples, every field with route and confidence · PRJNA866369_determinations.csv.gz (1.0 KB) — 72 evidence rows