Gut resistome in UK travellers to high-risk countries
143 stool samples from adult travellers in the UK, collected pre-travel, post-travel, and at 6-month follow-up, to study antibiotic resistance gene carriage; longitudinal design. machine-written summary
143 samples · 143 runs · GB · Age unknown · 2022 · 4.50 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 572 sample values (collection date, country, subject id, timepoint) |
| ✓ Abstract / description | 286 sample values (health condition, location locality) |
| ○ Full text | read; no usable statement or table · PMC10433802 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
48 of 48 people sampled more than once (143 samples; median 3, up to 3 per person). Schedule stated by the source: “Stool collected pre-travel (REP1), post-travel (REP2), and 6-month follow-up (REP3) per volunteer.” (time origin: other); stated follow-up 6 mo.
Genera, mean relative abundance over 129 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 143 | 100% | ||||
| country | 143 | 100% | 143 | |||
| health_condition | 143 | 100% | 143 | |||
| subject_id | 143 | 100% | 143 | |||
| collection_date | 143 | 100% | 143 | |||
| detailed_location | 143 | 100% | ||||
| location_locality | 143 | 100% | 143 | |||
| timepoint_label | 143 | 100% | 143 |
- Prevalence and Persistence of Antibiotic Resistance Determinants in the Gut of Travelers Returning to the United Kingdom is Associated with Colonization by Pathogenic Escherichia coli. 2023 PMID 37255437 PMC10433802 own_data
Archive description
Prevalence and persistence of antibiotic resistance determinants in the gut of travellers returning to the UK - a metagenomics study
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host run.scientific_name · “gut metagenome”
- body site study.description · “antibiotic resistance determinants in the gut”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN30455338 | collection_date | 2016 | R1 | 0.90 | biosample.attribute:collection_date | 2016 |
| SAMN30455338 | country | GB | R1 | 0.90 | sample.attr.geo_loc_name | United Kingdom |
| SAMN30455338 | health_condition | healthy_control | R4 | 0.40 | paper.abstract | Fifty volunteers, recruited at a travel clinic |
| SAMN30455338 | location_locality | London | R4 | 0.50 | paper.abstract | recruited at a travel clinic in London |
| SAMN30455338 | subject_id | GUT042 | R1 | 0.70 | sample.name_rule:source_material_id | GUT042_REP2 |
| SAMN30455338 | timepoint_label | REP2 | R1 | 0.70 | sample.name_rule:source_material_id | GUT042_REP2 |
Sequencing
143 runs over 143 samples · mean 4.56 Gbp per run (median 4.50 Gbp, total 652.09 Gbp; 143 runs with a base count) · layout PAIRED 143 · platform ILLUMINA 143 · models Illumina HiSeq 2500 (143) · 90% of runs with a Sandpiper profile · first public 2022-08-25 – 2022-08-26
Authors (12)
Dallman TJ first · Neuert S · Fernandez Turienzo C · Berin M · Richardson E · Fuentes-Utrilla P · Loman N · Gharbia S · Jenkins C · Behrens RH · Godbole G · Brown M last
Downloads
PRJNA872328.csv.gz (4.4 KB) · parquet (74.6 KB) — all 143 samples, every field with route and confidence · PRJNA872328_determinations.csv.gz (6.8 KB) — 858 evidence rows