Gut microbiota in colorectal cancer patient, Egypt
Cross-sectional study of 1 fecal sample from a colorectal cancer patient in Egypt, examining gut microbiota composition. machine-written summary
1 samples · 1 runs · EG · Age unknown · 2025 · 10.49 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 6 sample values (collection date, country, health condition, health condition detail, latitude, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 1 | 100% | 1 | |||
| health_condition | 1 | 100% | 1 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 1 | 100% | 1 | |||
| health_condition_detail | 1 | 100% | 1 | |||
| latitude | 1 | 100% | 1 | |||
| longitude | 1 | 100% | 1 |
Archive description
study aimed to reveal the microbiota composition of fecal samples of colorectal cancer Egyptian patients
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.description · “fecal samples of colorectal cancer Egyptian patients”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN30870302 | collection_date | 2020 | R1 | 0.90 | biosample.attribute:collection_date | 2020 |
| SAMN30870302 | country | EG | R1 | 0.90 | sample.attr.geo_loc_name | Egypt |
| SAMN30870302 | health_condition | colorectal_cancer | R1 | 0.85 | biosample.attribute:isolation_source | colorectal cancer patients |
| SAMN30870302 | health_condition_detail | colorectal cancer patients | R1 | 0.85 | biosample.attribute:isolation_source | colorectal cancer patients |
| SAMN30870302 | latitude | 30.1000 | R1 | 0.90 | biosample.attribute:lat_lon | 30.10 N 31.42 E |
| SAMN30870302 | longitude | 31.4200 | R1 | 0.90 | biosample.attribute:lat_lon | 30.10 N 31.42 E |
Sequencing
1 runs over 1 samples · mean 10.49 Gbp per run (median 10.49 Gbp, total 10.49 Gbp; 1 runs with a base count) · layout PAIRED 1 · platform DNBSEQ 1 · models DNBSEQ-T7 (1) · 0% of runs with a Sandpiper profile · first public 2025-09-21
Authors (0)
No author record.
Downloads
PRJNA880658.csv.gz (880 B) · parquet (69.3 KB) — all 1 samples, every field with route and confidence · PRJNA880658_determinations.csv.gz (484 B) — 6 evidence rows