Gut microbiome in Bhutanese refugee adults, New Hampshire
Cross-sectional study of 50 samples from Bhutanese refugee adults (43 adult, 7 elderly) residing in New Hampshire, USA, examining gut microbiome composition in relation to glycemic status, inflammation, and dietary fiber intake. machine-written summary
50 samples · 50 runs · US · Adult · 2022 · 0.96 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 350 sample values (age, bmi, collection date, country, latitude, location region, longitude) |
| ✓ Abstract / description | 50 sample values (subject id) |
| ✓ Full text | 50 sample values (location site) · PMC9852993 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| ✓ External resources | 50 sample values (antibiotic exposure) · from BugSigDB |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 49 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 50 | 100% | ||||
| country | 50 | 100% | 50 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 50 | 100% | 50 | |||
| age_at_collection_days | 50 | 100% | 50 | |||
| antibiotic_exposure | 50 | 100% | 50 | |||
| bmi | 50 | 100% | 50 | |||
| collection_date | 50 | 100% | 50 | |||
| detailed_location | 50 | 100% | ||||
| latitude | 50 | 100% | 50 | |||
| location_region | 50 | 100% | 50 | |||
| location_site | 50 | 100% | 50 | |||
| longitude | 50 | 100% | 50 |
- Association between inflammation, lipopolysaccharide binding protein, and gut microbiota composition in a New Hampshire Bhutanese refugee population with a high burden of type 2 diabetes. 2022 PMID 36687728 PMC9852993 own_data
Archive description
Characterization of the gut microbiome in (N=50) SNAP eligible NH Bhutanese refugee adults
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult and elderly by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Characterization of the gut microbiome in NH”
- body site study.description · “Characterization of the gut microbiome in (N=50)”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- life stage study.title · “NH Bhutanese refugee adults”
- life stage sample.attr.host_age · “64 (n=7/50)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN32228026 | age_at_collection_days | 17532.0 | R1 | 0.70 | sample.attr.host_age | 48 |
| SAMN32228026 | antibiotic_exposure | no | R2 | 0.60 | external.bugsigdb source | Antibiotics exclusion: 6 Months; 6 months |
| SAMN32228026 | bmi | 32.66 | R1 | 0.90 | sample.attr.host_body_mass_index | 32.659360469 |
| SAMN32228026 | collection_date | 2020 | R1 | 0.90 | biosample.attribute:collection_date | 2020 |
| SAMN32228026 | country | US | R1 | 0.90 | sample.attr.geo_loc_name | USA |
| SAMN32228026 | latitude | 43.1400 | R1 | 0.90 | biosample.attribute:lat_lon | 43.14 N 70.93 W |
| SAMN32228026 | location_region | New Hampshire | R1 | 0.60 | biosample.attribute:lat_lon | 43.14 N 70.93 W |
| SAMN32228026 | location_site | Building Community in New Hampshire (BCNH) | R3 | 0.70 | paper.fulltext.methods | Building Community in New Hampshire (BCNH) |
| SAMN32228026 | longitude | -70.9300 | R1 | 0.90 | biosample.attribute:lat_lon | 43.14 N 70.93 W |
| SAMN32228026 | subject_id | SAMN32228026 | R4 | 0.65 | design.one_sample_per_subject:abstract | This cross-sectional study included a convenience sample of Bhutanese refugee adults (N = 50) in NH |
Sequencing
50 runs over 50 samples · mean 0.94 Gbp per run (median 0.96 Gbp, total 46.87 Gbp; 50 runs with a base count) · layout PAIRED 50 · platform ILLUMINA 50 · models Illumina NovaSeq 6000 (50) · 98% of runs with a Sandpiper profile · first public 2022-12-20
Authors (13)
Moser B first · Moore D · Khadka B · Lyons C · Foxall T · Andam CP · Parker CJ · Ochin C · Garelnabi M · Sevigny J · Thomas WK · Bigornia S · Dao MC last
Downloads
PRJNA912151.csv.gz (2.7 KB) · parquet (73.3 KB) — all 50 samples, every field with route and confidence · PRJNA912151_determinations.csv.gz (5.2 KB) — 500 evidence rows