Gut microbiome in DLBCL patients, Seoul (case-control)
108 stool samples from cancer (DLBCL) patients in Seoul, Korea, including adult and elderly participants, studied using a case-control design to characterize the gut microbiome. machine-written summary
108 samples · 108 runs · KR · Adult · 2023 · 2.04 Gbp / sample · cohort Clinical Impact of Microbiome Characteristics in T
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 756 sample values (age, bmi, collection date, country, health condition, health condition detail, location region) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC12016819 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 101 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 108 | 100% | ||||
| country | 108 | 100% | 108 | |||
| health_condition | 108 | 100% | 108 | |||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 108 | 100% | 108 | |||
| bmi | 108 | 100% | 108 | |||
| collection_date | 108 | 100% | 108 | |||
| detailed_location | 108 | 100% | ||||
| health_condition_detail | 108 | 100% | 108 | |||
| location_region | 108 | 100% | 108 |
- Clinical Impact of Microbiome Characteristics in Treatment-Naïve Extranodal NK/T-Cell Lymphoma Patients. 2025 PMID 39164084 PMC12016819 unsure
Archive description
Gut microbiome of DLBCL patients
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult and elderly by sonnet_x2 with confidence 0.68. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “Gut microbiome of DLBCL patients”
- life stage sample.attr.host_age · “57 (n=67/108)”
- life stage sample.attr.host_age · “65 (n=36/108)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN32923693 | age_at_collection_days | 21915.0 | R1 | 0.70 | sample.attr.host_age | 60 |
| SAMN32923693 | bmi | 32.0 | R1 | 0.90 | sample.attr.host_body_mass_index | 32 |
| SAMN32923693 | collection_date | 2020-02-25 | R1 | 0.90 | biosample.attribute:collection_date | 2020-02-25 |
| SAMN32923693 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | Korea: Seoul |
| SAMN32923693 | health_condition | other_cancer | R1 | 0.90 | biosample_attr | DLBCL |
| SAMN32923693 | health_condition_detail | DLBCL | R1 | 0.90 | sample.attr.host_disease | DLBCL |
| SAMN32923693 | location_region | Seoul | R1 | 0.85 | biosample.attribute:geo_loc_name | Korea: Seoul |
Sequencing
108 runs over 108 samples · mean 2.11 Gbp per run (median 2.04 Gbp, total 227.39 Gbp; 108 runs with a base count) · layout PAIRED 108 · platform ILLUMINA 108 · models Illumina MiSeq (108) · 94% of runs with a Sandpiper profile · first public 2023-01-27
Authors (9)
Yoon SE first · Kang W · Cho J · Chalita M · Lee JH · Hyun DW · Kim H · Kim SJ · Kim WS last
Downloads
PRJNA928211.csv.gz (4.3 KB) · parquet (75.3 KB) — all 108 samples, every field with route and confidence · PRJNA928211_determinations.csv.gz (6.3 KB) — 756 evidence rows