Gut microbiota in UC patients undergoing FMT, Nanjing, China
32 samples from Nanjing, China, from patients with inflammatory bowel disease (ulcerative colitis), studying gut microbiota abundance before and after fecal microbiota transplantation (FMT) in an intervention design. machine-written summary
32 samples · 32 runs · Age unknown · 2024 · 11.48 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 64 sample values (health condition, health condition detail) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Faecal microbiota transplantation design single_arm_before_after · population ulcerative_colitis · Washed microbiota transplantation (WMT) in UC patients
“UC patients with or without WMT” — bioproject.description (study level; per-sample arms are in the intervention column below)
Genera, mean relative abundance over 1 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 32 | 100% | 32 | |||
| subject_id | 0 | 0% | ||||
| health_condition_detail | 32 | 100% | 32 |
Archive description
Gut microbiota genomic DNA was extracted from UC patients with or without WMT, and observed the abundance of gut microbiota before and after treatment
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.78. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.description · “Gut microbiota genomic DNA was extracted”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SRR23343192 | health_condition | ulcerative_colitis | R1 | 0.70 | sample.name_rule:experiment_title | experiment_title: Illumina NovaSeq 6000 sequencing: metagenome-Seqofgutmicrobiota:UCpatients |
| SRR23343192 | health_condition_detail | Illumina NovaSeq 6000 sequencing: metagenome-Seqofgutmicrobiota:UCpatients | R1 | 0.70 | sample.name_rule:experiment_title | experiment_title: Illumina NovaSeq 6000 sequencing: metagenome-Seqofgutmicrobiota:UCpatients |
Sequencing
32 runs over 32 samples · mean 11.96 Gbp per run (median 11.48 Gbp, total 382.88 Gbp; 32 runs with a base count) · layout PAIRED 32 · platform ILLUMINA 32 · models Illumina NovaSeq 6000 (32) · 97% of runs with a Sandpiper profile · first public 2024-03-14
Authors (0)
No author record.
Downloads
PRJNA929645.csv.gz (1.6 KB) · parquet (69.6 KB) — all 32 samples, every field with route and confidence · PRJNA929645_determinations.csv.gz (843 B) — 64 evidence rows