Infant fecal microbiota in C. difficile case, China
29 fecal metagenome samples from Shijiazhuang, China, associated with a case report of C. difficile infection and diarrhea in a 1-month-old infant treated with norvancomycin and probiotics. machine-written summary
29 samples · 29 runs · CN · Age unknown · 2023 · 18.7 Mbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 174 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ✓ Abstract / description | 29 sample values (subject id) |
| ○ Full text | read; no usable statement or table · PMC10311876 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 29 | 100% | 29 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 29 | 100% | 29 | |||
| collection_date | 29 | 100% | 29 | |||
| detailed_location | 29 | 100% | ||||
| latitude | 29 | 100% | 29 | |||
| location_locality | 29 | 100% | 29 | |||
| location_region | 29 | 100% | 29 | |||
| longitude | 29 | 100% | 29 |
- Clostridioides difficile infection in infants: a case report and literature review. 2023 PMID 37386612 PMC10311876 own_data
Archive description
Fecal microbiota composition of patients at different stages
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host study.description · “Fecal microbiota composition of patients”
- body site run.scientific_name · “feces metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN34376393 | collection_date | 2021-09-15 | R1 | 0.90 | biosample.attribute:collection_date | 2021-09-15 |
| SAMN34376393 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Shijiazhuang |
| SAMN34376393 | latitude | 38.0300 | R1 | 0.90 | biosample.attribute:lat_lon | 38.03 N 114.29 E |
| SAMN34376393 | location_locality | Shijiazhuang | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Shijiazhuang |
| SAMN34376393 | location_region | Henan Sheng | R1 | 0.60 | biosample.attribute:lat_lon | 38.03 N 114.29 E |
| SAMN34376393 | longitude | 114.2900 | R1 | 0.90 | biosample.attribute:lat_lon | 38.03 N 114.29 E |
| SAMN34376393 | subject_id | PRJNA961946_subject1 | R4 | 0.60 | design.single_subject:abstract | we reported a 1-month-old girl with CDI who was born with neonatal hypoglycemia |
Sequencing
29 runs over 29 samples · mean 18.7 Mbp per run (median 18.7 Mbp, total 0.54 Gbp; 29 runs with a base count) · layout SINGLE 29 · platform ILLUMINA 29 · models Illumina NovaSeq 6000 (29) · 0% of runs with a Sandpiper profile · first public 2023-05-05
Authors (13)
Li Z first · Dong N · Hao J · Ouyang Z · Qiang C · Yang Y · Mi C · Niu Y · Yang J · Wen B · Wang L · Zhang S · Zhao J last
Downloads
PRJNA961946.csv.gz (1.6 KB) · parquet (71.0 KB) — all 29 samples, every field with route and confidence · PRJNA961946_determinations.csv.gz (2.2 KB) — 203 evidence rows