Gut Microbiome of Diverse Egyptian Populations
A gut metagenome study of 6 samples from diverse Egyptian populations; no further details on age, health conditions, or design are provided in the available sources. machine-written summary
6 samples · 6 runs · EG · Age unknown · 2024 · 12.03 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 12 sample values (collection date, country) |
| ✓ Abstract / description | 18 sample values (health condition, health condition detail, subject id) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 6 | 100% | ||||
| country | 6 | 100% | 6 | |||
| health_condition | 6 | 100% | 6 | |||
| subject_id | 6 | 100% | 6 | |||
| collection_date | 6 | 100% | 6 | |||
| health_condition_detail | 6 | 100% | 6 |
- Investigation of bacterial gut microbiome in diverse Egyptian populations "pilot study". 2025 PMID 39910939 own_data
Archive description
This research aims to study the bacterial community structure of gut microbiota within diverse populations in Egypt as well as to determine the correlation between gut microbiota composition in the study groups and the already identified compositions linked to different diseases as risk factors in these groups.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.62. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “Bacterial Gut Microbiome of Diverse Egyptian Populations”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN35689380 | collection_date | 2022-01-20 | R1 | 0.85 | biosample.attribute:collection_date | collection_date: 2022-01-20 |
| SAMN35689380 | country | EG | R1 | 0.85 | biosample.attribute:geo_loc_name | geo_loc_name: Egypt |
| SAMN35689380 | health_condition | healthy_control | R4 | 0.50 | paper.abstract | Fecal samples were obtained from six healthy individuals, three from Cairo and three from Ismailia |
| SAMN35689380 | health_condition_detail | healthy individuals | R4 | 0.50 | paper.abstract | Fecal samples were obtained from six healthy individuals, three from Cairo and three from Ismailia |
| SAMN35689380 | subject_id | SAMN35689380 | R4 | 0.60 | design.one_sample_per_subject:abstract | Fecal samples were obtained from six healthy individuals, three from Cairo and three from Ismailia |
Sequencing
6 runs over 6 samples · mean 11.86 Gbp per run (median 12.03 Gbp, total 71.15 Gbp; 6 runs with a base count) · layout SINGLE 6 · platform BGISEQ 6 · models BGISEQ-500 (6) · 0% of runs with a Sandpiper profile · first public 2024-09-29
Authors (0)
No author record.
Downloads
PRJNA982264.csv.gz (1.0 KB) · parquet (69.4 KB) — all 6 samples, every field with route and confidence · PRJNA982264_determinations.csv.gz (853 B) — 30 evidence rows