Gut metagenome in recurrent acute pancreatitis, China
33 fecal metagenome samples from Shanghai, China, collected in a cross-sectional study of recurrent acute pancreatitis and its association with gut microbial species and metabolic pathways. machine-written summary
33 samples · 33 runs · CN · Adult · 2025 · 7.84 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 165 sample values (age, collection date, country, location region, sex) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC12660694 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
design observational_with_procedure · FMT enriched with F. prausnitzii; Fp strain/oleic acid in mouse AP models
Genera, mean relative abundance over 33 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 33 | 100% | ||||
| country | 33 | 100% | 33 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 33 | 100% | 33 | |||
| collection_date | 33 | 100% | 33 | |||
| detailed_location | 33 | 100% | ||||
| location_region | 33 | 100% | 33 | |||
| sex | 33 | 100% | 33 |
- Faecalibacterium prausnitzii alleviates experimental recurrent acute pancreatitis by producing oleic acid to regulate MAPK/NF-κB signaling and Th17/Treg balance. 2025 PMID 41271774 PMC12660694 own_data
Archive description
normal metagenome of human fecal
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.description · “normal metagenome of human fecal”
- life stage sample.attr.age · “38 (n=30/33)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN36003726 | age_at_collection_days | 10227.0 | R1 | 0.70 | sample.attr.age | 28 |
| SAMN36003726 | collection_date | 2021-06 | R1 | 0.90 | biosample.attribute:collection_date | 2021-06 |
| SAMN36003726 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Shanghai |
| SAMN36003726 | location_region | Shanghai | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Shanghai |
| SAMN36003726 | sex | female | R1 | 0.90 | sample.attr.sex | female |
Sequencing
33 runs over 33 samples · mean 8.00 Gbp per run (median 7.84 Gbp, total 264.06 Gbp; 33 runs with a base count) · layout SINGLE 33 · platform ILLUMINA 33 · models Illumina NovaSeq 6000 (33) · 100% of runs with a Sandpiper profile · first public 2025-11-01
Authors (10)
Qin W first · Mei Q · Wang G · Wang R · Huang Z · Fu Y · Xu B · Huang C · Ai L · Zeng Y last
Downloads
PRJNA988170.csv.gz (1.9 KB) · parquet (70.6 KB) — all 33 samples, every field with route and confidence · PRJNA988170_determinations.csv.gz (1.6 KB) — 165 evidence rows