Gut microbiota in gestational diabetes, Beijing, China
200 samples from adult women in Beijing, China, comparing gut microbiota between gestational diabetes (100) and healthy controls (100). machine-written summary
200 samples · 200 runs · CN · Adult · 2023 · 5.90 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1,550 sample values (collection date, country, health condition, health condition detail, latitude, location locality, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| ✓ External resources | 240 sample values (health condition, health condition detail) · from GMrepo v3 |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
42 of 42 people sampled more than once (199 samples; median 2, up to 60 per person).
Genera, mean relative abundance over 186 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 200 | 100% | ||||
| country | 200 | 100% | 200 | |||
| health_condition | 200 | 100% | 80 | 120 | ||
| subject_id | 199 | 100% | 199 | |||
| collection_date | 200 | 100% | 200 | |||
| detailed_location | 200 | 100% | ||||
| health_condition_detail | 200 | 100% | 80 | 120 | ||
| latitude | 200 | 100% | 200 | |||
| location_locality | 200 | 100% | 200 | |||
| longitude | 200 | 100% | 200 | |||
| location_region | 191 | 96% | 191 |
Archive description
Gut microbiota in women with gestational diabetes mellitus
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “human gut Raw sequence reads”
- life stage study.description · “Gut microbiota in women with gestational diabetes”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN36505649 | collection_date | 2017 | R1 | 0.90 | biosample.attribute:collection_date | 2017 |
| SAMN36505649 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Beijing |
| SAMN36505769 | health_condition | healthy_control | R1 | 0.85 | biosample.attribute:group | con |
| SAMN36505649 | health_condition | pregnancy_postpartum | R2 | 0.75 | external.gmrepo source | phenotype: Diabetes, Gestational |
| SAMN36505769 | health_condition_detail | con | R1 | 0.85 | biosample.attribute:group | con |
| SAMN36505649 | health_condition_detail | Diabetes, Gestational | R2 | 0.75 | external.gmrepo source | phenotype: Diabetes, Gestational |
| SAMN36505649 | latitude | 39.8400 | R1 | 0.90 | biosample.attribute:lat_lon | 39.84 N 116.29 E |
| SAMN36505649 | location_locality | Beijing | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Beijing |
| SAMN36505649 | location_region | Beijing | R1 | 0.60 | biosample.attribute:lat_lon | 39.84 N 116.29 E |
| SAMN36505649 | longitude | 116.2900 | R1 | 0.90 | biosample.attribute:lat_lon | 39.84 N 116.29 E |
| SAMN36505649 | subject_id | GDM | R1 | 0.70 | sample.name_rule:sample_alias | GDMM9 |
Sequencing
200 runs over 200 samples · mean 6.46 Gbp per run (median 5.90 Gbp, total 1,291.80 Gbp; 200 runs with a base count) · layout PAIRED 200 · platform ILLUMINA 200 · models Illumina HiSeq 2500 (200) · 93% of runs with a Sandpiper profile · first public 2023-07-20
Authors (0)
No author record.
Downloads
PRJNA994318.csv.gz (5.7 KB) · parquet (77.5 KB) — all 200 samples, every field with route and confidence · PRJNA994318_determinations.csv.gz (14.2 KB) — 1,790 evidence rows