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REGISTRY_REPORT — registry_studies (R2026.25)

Full registry universe.

Studies: 64,369 · runs: 2,334,512 · samples: 2,028,236 · needs-LLM (stage pending): 417

host_human

value studies
no 43,775
unknown 13,696
yes 6,652
mixed 246

body_site_primary

value studies
(null) 43,760
unknown_site 14,018
gut_stool 3,349
blood_tissue 1,182
respiratory_lower 511
oral 444
vaginal_urogenital 258
skin 245
nasal_nasopharyngeal 195
other_site 171
multi_site 149
eye_ear 60
milk 27

life_stage_primary

value studies
(null) 43,765
unknown_age 17,987
adult 1,509
infant 450
child 433
mixed_ages 86
elderly 59
neonate 51
adolescent 29

assay

value studies
shotgun_dna 45,355
other 17,327
isolate_genome 526
amplicon_misfiled 391
mixed 357
rna 181
amplicon 132
unknown 97
assembly_only 3

classification_stage

value studies
deterministic_rule 52,142
sonnet_x2 5,164
deterministic_prior 4,808
opus_adjudicated 1,663
pending 417
owner_decision 96
curator_audit 79

in_infant_catalog

value studies
not_screened 54,788
exclude 9,140
include 389
uncertain 52

access

value studies
open 64,368
controlled 1

scope_memberships (a study can be in several)

scope studies
human_all 4,675
gut_adult 1,202
blood_tissue 1,127
unknown_site 993
respiratory 769
oral 586
infant_gut 389
gut_child 368
vaginal_urogenital 282
skin 256
other_site 251
milk 64

registry_universe_audit (enumeration track)

slice partition tag query ena_count rows_pulled complete seconds
S1 y2010 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2010-01-01 AND first_public<=2010-12-31 1862 1862 True 0
S1 y2011 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2011-01-01 AND first_public<=2011-12-31 1045 1045 True 0
S1 y2012 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2012-01-01 AND first_public<=2012-12-31 7645 7645 True 0.1
S1 y2013 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2013-01-01 AND first_public<=2013-12-31 6019 6019 True 0
S1 y2014 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2014-01-01 AND first_public<=2014-12-31 11247 11247 True 0.1
S1 y2015 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2015-01-01 AND first_public<=2015-12-31 24668 24668 True 0.2
S1 y2016 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2016-01-01 AND first_public<=2016-12-31 18494 18494 True 0.1
S1 y2017 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2017-01-01 AND first_public<=2017-12-31 35544 35544 True 0.3
S1 y2018 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2018-01-01 AND first_public<=2018-12-31 53985 53985 True 0.4
S1 y2019 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2019-01-01 AND first_public<=2019-12-31 87954 87954 True 0.7
S1 y2020 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2020-01-01 AND first_public<=2020-12-31 87741 87741 True 0.7
S1 y2021 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2021-01-01 AND first_public<=2021-12-31 99071 99071 True 0.8
S1 y2022 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2022-01-01 AND first_public<=2022-12-31 111886 111886 True 0.9
S1 y2023q1 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-01-01 AND first_public<=2023-03-31 44101 44101 True 0.3
S1 y2023q2 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-04-01 AND first_public<=2023-06-30 44844 44844 True 0.3
S1 y2023q3 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-07-01 AND first_public<=2023-09-30 36324 36324 True 0.3
S1 y2023q4 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2023-10-01 AND first_public<=2023-12-31 36046 36046 True 0.3
S1 y2024q1 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-01-01 AND first_public<=2024-03-31 53477 53477 True 0.4
S1 y2024q2 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-04-01 AND first_public<=2024-06-30 41424 41424 True 0.3
S1 y2024q3 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-07-01 AND first_public<=2024-09-30 48802 48802 True 0.4
S1 y2024q4 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2024-10-01 AND first_public<=2024-12-31 75871 75871 True 0.6
S1 y2025q1 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-01-01 AND first_public<=2025-03-31 60575 60575 True 0.5
S1 y2025q2 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-04-01 AND first_public<=2025-06-30 66581 66581 True 0.6
S1 y2025q3 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-07-01 AND first_public<=2025-09-30 54876 54876 True 0.4
S1 y2025q4 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2025-10-01 AND first_public<=2025-12-31 75675 75675 True 0.6
S1 y2026q1 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-01-01 AND first_public<=2026-03-31 79923 79923 True 0.6
S1 y2026q2 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-04-01 AND first_public<=2026-06-30 103156 103156 True 0.8
S1 y2026q3 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-07-01 AND first_public<=2026-09-30 66596 66596 True 0.5
S1 y2026q4 shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND first_public>=2026-10-01 AND first_public<=2026-12-31 0 0 True 0
S1 fill_missing_from_index shotgun_frame_free run_accession IN (<29952 accessions missing from partitions>) 29952 29952 True 0
S1 TOTAL shotgun_frame_free library_source="METAGENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") 1465384 1465384 True 11.2
S2 all misfiled_genomic_human_taxa library_source="GENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)) 62089 62089 True 0.5
S2 TOTAL misfiled_genomic_human_taxa library_source="GENOMIC" AND (library_strategy="WGS" OR library_strategy="WXS") AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)) 62089 62089 True 0.5
S3 all adjudication_other_tc_wga (library_strategy="OTHER" OR library_strategy="Targeted-Capture" OR library_strategy="WGA") AND (library_source="METAGENOMIC" OR (library_source="OTHER" AND (host_tax_id=9606 OR tax_eq(9606) OR (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) OR (library_source="GENOMIC" AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) 457755 457755 True 46.4
S3 TOTAL adjudication_other_tc_wga (library_strategy="OTHER" OR library_strategy="Targeted-Capture" OR library_strategy="WGA") AND (library_source="METAGENOMIC" OR (library_source="OTHER" AND (host_tax_id=9606 OR tax_eq(9606) OR (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) OR (library_source="GENOMIC" AND (tax_eq(408170) OR tax_eq(433733) OR tax_eq(447426) OR tax_eq(539655) OR tax_eq(646099) OR tax_eq(749906) OR tax_eq(1131769) OR tax_eq(1504969) OR tax_eq(1630596) OR tax_eq(1632839) OR tax_eq(1633571) OR tax_eq(1679718) OR tax_eq(1712573) OR tax_eq(1774142) OR tax_eq(1837932) OR tax_eq(1842734) OR tax_eq(1861841) OR tax_eq(2489051) OR tax_eq(2516875) OR tax_eq(2517771) OR tax_eq(2705415)))) 457755 457755 True 46.4