Blood / tissue blood_tissue
Blood, tissue-biopsy and sterile-site-fluid shotgun metagenomes.
Membership rule (config/scope.yaml): blood_tissue in body_sites. Memberships derive deterministically from host, body sites, life stages and assay; a study can belong to several scopes.
1,251
studies
161,229
runs
119,909
BioSamples
78,203
BioSamples with harvested attributes — site known 73 %, age 8 %, sex 36 %
30,317
runs with a Sandpiper profile (19 %)
1,245
classified · 6 pending
Open in the registry explorer (pre-filtered) All scopes
Body sites and life stages within the scope
Primary body site (body_site_primary)
| value | studies | runs |
|---|---|---|
| blood_tissue | 967 | 76,247 |
| gut_stool | 156 | 74,960 |
| multi_site | 37 | 3,323 |
| other_site | 26 | 1,342 |
| respiratory_lower | 24 | 1,786 |
| unknown_site | 19 | 1,483 |
| vaginal_urogenital | 7 | 773 |
| oral | 6 | 612 |
| eye_ear | 4 | 118 |
| nasal_nasopharyngeal | 4 | 536 |
| skin | 1 | 49 |
Primary life stage (life_stage_primary)
| value | studies | runs |
|---|---|---|
| unknown_age | 820 | 64,160 |
| adult | 280 | 35,463 |
| child | 72 | 5,937 |
| infant | 31 | 7,550 |
| mixed_ages | 20 | 44,456 |
| elderly | 13 | 2,445 |
| neonate | 10 | 1,188 |
| adolescent | 5 | 30 |
Assay (assay)
| value | studies | runs |
|---|---|---|
| shotgun_dna | 602 | 111,823 |
| other | 450 | 31,445 |
| rna | 98 | 3,522 |
| isolate_genome | 45 | 7,478 |
| mixed | 24 | 2,650 |
| amplicon_misfiled | 15 | 1,526 |
| amplicon | 9 | 1,930 |
| unknown | 8 | 855 |
Classification stage (classification_stage)
| value | studies | runs |
|---|---|---|
| sonnet_x2 | 816 | 104,680 |
| opus_adjudicated | 275 | 25,633 |
| deterministic_prior | 138 | 29,644 |
| owner_decision | 10 | 627 |
| pending | 6 | 150 |
| deterministic_rule | 4 | 219 |
| curator_audit | 2 | 276 |
Largest studies by BioSamples (top 25)
| study | title | BioSamples | runs | sites | stages | assay | stage |
|---|---|---|---|---|---|---|---|
| PRJNA416160 ENA | The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study | 21,012 | 43,327 | gut_stool;blood_tissue | neonate;infant;child | shotgun_dna | sonnet_x2 |
| PRJNA604975 ENA | Gram-negative bacteremias in Oxfordshire | 2,334 | 2,334 | blood_tissue | unknown_age | isolate_genome | opus_adjudicated |
| PRJNA1143941 ENA | 7-year performance of a clinical metagenomic next-generation sequencing test for diagnosis of central... | 2,321 | 2,321 | blood_tissue | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA398089 ENA | Longitudinal Multi’omics of the Human Microbiome in Inflammatory Bowel Disease | 2,041 | 2,041 | gut_stool;blood_tissue | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJNA746290 ENA | Circulating Microbiome in Myeloid Malignancy | 1,879 | 1,879 | blood_tissue | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA396639 ENA | Scalable Whole-exome Sequencing of Cell-free DNA Reveals High Concordance with Metastatic Tumors | 1,591 | 1,657 | blood_tissue | unknown_age | other | opus_adjudicated |
| PRJNA1493863 ENA | SuperbugAi Melbourne | 1,418 | 1,418 | blood_tissue | unknown_age | isolate_genome | sonnet_x2 |
| PRJNA693850 ENA | Inference of association with the gut microbiota in stool, swab and mucosal tissue samples | 1,397 | 1,397 | gut_stool;blood_tissue | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1445561 ENA | System-level gut microbial functional dysregulation in treatment-naive chronic constipation and its... | 1,248 | 1,248 | gut_stool;blood_tissue | adult | shotgun_dna | deterministic_prior |
| PRJNA643353 ENA | The gut microbiome related effect of Berberine and probiotics in treating Type 2 Diabetes | 1,192 | 1,192 | gut_stool;blood_tissue | adult | shotgun_dna | deterministic_prior |
| PRJNA810087 ENA | Prospective and cross-sectional associations of the rectal tissue microbiome with colorectal adenoma... | 1,030 | 1,030 | gut_stool;blood_tissue | unknown_age | amplicon | opus_adjudicated |
| PRJEB49368 ENA | Exploiting Genomic and Metagenomic Determinants of the Metabolome in Non-Alcoholic Fatty Liver Disease for... | 984 | 984 | blood_tissue | adult | shotgun_dna | deterministic_prior |
| PRJNA1390285 ENA | Staphylococcus aureus Genomes from CHOP NICU MRSA/MSSA surveillance | 982 | 982 | blood_tissue | neonate | isolate_genome | sonnet_x2 |
| PRJEB64401 ENA | Reliable pathogen identification in patients with sepsis or septic shock applying a metagenomic diagnostic... | 974 | 974 | blood_tissue | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1391420 ENA | Humoral pregnancy analyses reveal strategies for fetal protection and aberrancy in miscarriage [3] | 960 | 3,264 | blood_tissue | adult | other | sonnet_x2 |
| PRJNA399604 ENA | Homo sapiens Raw sequence reads | 951 | 951 | blood_tissue | adult | other | sonnet_x2 |
| PRJNA1391389 ENA | Humoral pregnancy analyses reveal strategies for fetal protection and aberrancy in miscarriage [1] | 913 | 913 | blood_tissue | adult | other | sonnet_x2 |
| PRJNA666535 ENA | Blood Virosphere in Febrile Tanzanian Children | 816 | 1,659 | blood_tissue | child | other | sonnet_x2 |
| PRJNA1424583 ENA | Multi-omic analysis reveals molecular subtypes with distinct immunological phenotypes in SLE [EM-Seq] | 804 | 805 | blood_tissue | unknown_age | other | sonnet_x2 |
| PRJNA290380 ENA | A longitudinal analysis of the developing gut microbiome in infants from Finland, Estonia, and Russian Karelia | 785 | 785 | gut_stool;blood_tissue | infant;neonate;child | shotgun_dna | deterministic_prior |
| PRJNA1391404 ENA | Humoral pregnancy analyses reveal strategies for fetal protection and aberrancy in miscarriage [2] | 768 | 768 | blood_tissue | adult | other | opus_adjudicated |
| PRJEB72385 ENA | Fecal Microbiota Transplantation on Hypertension: an exploratory, multi-center, randomized, blinded,... | 751 | 751 | gut_stool;blood_tissue | adult | shotgun_dna | deterministic_prior |
| PRJNA1228057 ENA | Aged and BRCA mutated stromal cells drive epithelial cell transformation | 738 | 738 | blood_tissue | unknown_age | other | opus_adjudicated |
| PRJEB85927 ENA | Beneficial effects of a clinical metagenomics intervention on clinical outcomes, healthcare economics, and... | 726 | 726 | blood_tissue | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA1106565 ENA | Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy term infants | 669 | 669 | gut_stool;blood_tissue | infant;child | shotgun_dna | deterministic_prior |
Counts are computed from data/registry_studies.parquet at build time (release R2026.25).