Gut microbiota and enterolignan production in Japanese adults
50 gut microbiome samples from healthy adults in Atsugi, Kanagawa, Japan, in a cross-sectional study examining gut bacteria associated with enterolignan (enterodiol/enterolactone) production from dietary lignans. machine-written summary
50 samples · 50 runs · JP · Adult · 2025 · 0.11 Gbp / sample
One study deposited as 4 BioProjects (178 catalog samples together): PRJDB14457 · PRJDB18384 · PRJDB18387 · PRJDB18854 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 406 sample values (age, collection date, country, latitude, location locality, location region, longitude, sex) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 100 sample values (health condition, health condition detail) · PMC12137908, PMC9697123 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 50 | 100% | ||||
| country | 50 | 100% | 50 | |||
| health_condition | 50 | 100% | 50 | |||
| subject_id | 50 | 100% | 50 | |||
| collection_date | 50 | 100% | 50 | |||
| detailed_location | 50 | 100% | ||||
| health_condition_detail | 50 | 100% | 50 | |||
| latitude | 50 | 100% | 50 | |||
| location_locality | 50 | 100% | 50 | |||
| location_region | 50 | 100% | 50 | |||
| longitude | 50 | 100% | 50 | |||
| sex | 50 | 100% | 50 | |||
| age_at_collection_days | 6 | 12% | 6 |
- Identification of Human Gut Microbiome Associated with Enterolignan Production. 2022 PMID 36363762 PMC9697123 own_data
- NIBN Japan Microbiome Database, a database for exploring the correlations between human microbiome and health. 2025 PMID 40467839 PMC12137908 own_data
Archive description
16S rDNA amplicon sequence of gut microbiota of healthy Japanese adult living in Atsugi, Kanagawa, Japan.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult and elderly by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_unknown_no_evidence”
- body site study.title · “Gut microbiota of healthy”
- body site study.description · “amplicon sequence of gut microbiota of healthy”
- life stage study.title · “of healthy Japanese adult”
- life stage study.description · “of healthy Japanese adult living in Atsugi,”
- life stage sample.attr.host_age · “50- (n=6/50)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD00899508 | age_at_collection_days | 11015.0 | R1 | 0.85 | sample.attr.host_age | 29-31 |
| SAMD00899505 | collection_date | 2020-10 | R1 | 0.90 | biosample.attribute:collection_date | 2020-10 |
| SAMD00899505 | country | JP | R1 | 0.90 | sample.attr.geo_loc_name | Japan:Kanagawa, Atsugi |
| SAMD00899505 | health_condition | healthy_control | R3 | 0.60 | paper.fulltext.results | Participants with no severe health issues were recruited |
| SAMD00899505 | health_condition_detail | Participants with no severe health issues | R3 | 0.60 | paper.fulltext.results | Participants with no severe health issues were recruited |
| SAMD00899505 | latitude | 35.4400 | R1 | 0.90 | biosample.attribute:lat_lon | 35.44 N 139.36 E |
| SAMD00899505 | location_locality | Atsugi | R1 | 0.85 | biosample.attribute:geo_loc_name | Japan:Kanagawa, Atsugi |
| SAMD00899505 | location_region | Kanagawa | R1 | 0.85 | biosample.attribute:geo_loc_name | Japan:Kanagawa, Atsugi |
| SAMD00899505 | longitude | 139.3600 | R1 | 0.90 | biosample.attribute:lat_lon | 35.44 N 139.36 E |
| SAMD00899505 | sex | female | R1 | 0.90 | sample.attr.host_sex | female |
| SAMD00899505 | subject_id | PN010393 | R1 | 0.85 | sample.attr.host_subject_id | PN010393 |
Sequencing
50 runs over 50 samples · mean 0.11 Gbp per run (median 0.11 Gbp, total 5.47 Gbp; 50 runs with a base count) · layout PAIRED 50 · platform ILLUMINA 50 · models Illumina NovaSeq 6000 (50) · 0% of runs with a Sandpiper profile · first public 2025-05-18
Authors (13)
Sawane K first · Hosomi K · Park J · Ookoshi K · Nanri H · Nakagata T · Chen YA · Mohsen A · Kawashima H · Mizuguchi K · Miyachi M · Kunisawa J last · Murakami H
Downloads
PRJDB14457.csv.gz (2.4 KB) · parquet (72.8 KB) — all 50 samples, every field with route and confidence · PRJDB14457_determinations.csv.gz (3.9 KB) — 506 evidence rows