Healthy Japanese adult gut microbiota, Settsu, Osaka
Shotgun metagenomic sequencing of 5 gut microbiota samples from healthy Japanese adults living in Settsu, Osaka, Japan, in a cross-sectional design. machine-written summary
5 samples · 5 runs · JP · Adult · 2025 · 3.26 Gbp / sample
One study deposited as 4 BioProjects (178 catalog samples together): PRJDB14457 · PRJDB18384 · PRJDB18387 · PRJDB18854 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 45 sample values (age, collection date, country, latitude, location locality, location region, longitude, sex) |
| ✓ Abstract / description | 10 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 5 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 5 | 100% | ||||
| country | 5 | 100% | 5 | |||
| health_condition | 5 | 100% | 5 | |||
| subject_id | 5 | 100% | 5 | |||
| age_at_collection_days | 5 | 100% | 5 | |||
| collection_date | 5 | 100% | 5 | |||
| detailed_location | 5 | 100% | ||||
| health_condition_detail | 5 | 100% | 5 | |||
| latitude | 5 | 100% | 5 | |||
| location_locality | 5 | 100% | 5 | |||
| location_region | 5 | 100% | 5 | |||
| longitude | 5 | 100% | 5 | |||
| sex | 5 | 100% | 5 |
Archive description
Shotgun metagenomic sequence of gut microbiota of healthy Japanese adult living in Settsu, Osaka, Japan.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_unknown_no_evidence”
- body site study.title · “Gut microbiota of healthy”
- body site study.description · “metagenomic sequence of gut microbiota of healthy”
- life stage study.title · “of healthy Japanese adult”
- life stage study.description · “of healthy Japanese adult living in Settsu,”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD00798022 | age_at_collection_days | 7933.0 | R1 | 0.85 | sample.attr.host_age | 20-24 |
| SAMD00798022 | collection_date | 2023-07 | R1 | 0.90 | biosample.attribute:collection_date | 2023-07 |
| SAMD00798022 | country | JP | R1 | 0.90 | sample.attr.geo_loc_name | Japan:Osaka, Settsu |
| SAMD00798022 | health_condition | healthy_control | R4 | 0.50 | study.description | healthy Japanese adult |
| SAMD00798022 | health_condition_detail | Healthy | R4 | 0.50 | study.description | healthy Japanese adult |
| SAMD00798022 | latitude | 34.7800 | R1 | 0.90 | biosample.attribute:lat_lon | 34.78 N 135.56 E |
| SAMD00798022 | location_locality | Settsu | R1 | 0.85 | biosample.attribute:geo_loc_name | Japan:Osaka, Settsu |
| SAMD00798022 | location_region | Osaka | R1 | 0.85 | biosample.attribute:geo_loc_name | Japan:Osaka, Settsu |
| SAMD00798022 | longitude | 135.5600 | R1 | 0.90 | biosample.attribute:lat_lon | 34.78 N 135.56 E |
| SAMD00798022 | sex | female | R1 | 0.90 | sample.attr.host_sex | female |
| SAMD00798022 | subject_id | PN004449 | R1 | 0.85 | sample.attr.host_subject_id | PN004449 |
Sequencing
5 runs over 5 samples · mean 3.38 Gbp per run (median 3.26 Gbp, total 16.88 Gbp; 5 runs with a base count) · layout PAIRED 5 · platform ILLUMINA 5 · models Illumina NovaSeq 6000 (5) · 100% of runs with a Sandpiper profile · first public 2025-06-18
Authors (0)
No author record.
Downloads
PRJDB18387.csv.gz (1.0 KB) · parquet (70.6 KB) — all 5 samples, every field with route and confidence · PRJDB18387_determinations.csv.gz (1.0 KB) — 55 evidence rows