Gut virome in children with ASD, cross-sectional
Cross-sectional study of 22 human gut virome samples from children, examining relation to autism spectrum disorder; country of origin not disclosed. machine-written summary
22 samples · 22 runs · CN · Child · 2025 · 4.05 Gbp / sample · cohort Comparison of gut viral communities between autism
One study deposited as 2 BioProjects (44 catalog samples together): PRJDB38518 · PRJNA1322369 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 22 sample values (collection date) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 88 sample values (antibiotic exposure, country, location region, location site) · PMC12558881 |
| ✓ Supplementary tables | 44 sample values (health condition, health condition detail) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 21 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 22 | 100% | ||||
| country | 22 | 100% | 22 | |||
| health_condition | 22 | 100% | 22 | |||
| subject_id | 0 | 0% | ||||
| antibiotic_exposure | 22 | 100% | 22 | |||
| collection_date | 22 | 100% | 22 | |||
| detailed_location | 22 | 100% | ||||
| health_condition_detail | 22 | 100% | 22 | |||
| location_region | 22 | 100% | 22 | |||
| location_site | 22 | 100% | 22 |
- Comparison of gut viral communities between autism spectrum disorder and healthy children. 2025 PMID 41163852 PMC12558881 own_data
Archive description
Human gut virome relation with ASD and healthy children
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host run.scientific_name · “human gut metagenome”
- body site study.title · “Human gut virome”
- life stage study.description · “ASD and healthy children”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD01709104 | antibiotic_exposure | no | R3 | 0.70 | paper.body.methods | all participants were required to be no use of antibiotics or antiviral drugs within 3 weeks |
| SAMD01709104 | collection_date | 2023-12-01 | R1 | 0.90 | biosample.attribute:collection_date | 2023-12-01 |
| SAMD01709104 | country | CN | R3 | 0.70 | paper.body.methods | Affiliated Hospital of Jiangsu University (Jiangsu Province, China) and 11 fecal samples from healthy children who were in the same hospital |
| SAMD01709104 | health_condition | neurological_psychiatric | R2 | 0.80 | paper.supp.Table2.xlsx[Sheet1!Group] | Humanfe011 Group: ASD |
| SAMD01709104 | health_condition_detail | ASD | R2 | 0.80 | paper.supp.Table2.xlsx[Sheet1!Group] | Humanfe011 Group: ASD |
| SAMD01709104 | location_region | Jiangsu Province | R3 | 0.70 | paper.body.methods | Affiliated Hospital of Jiangsu University (Jiangsu Province, China) and 11 fecal samples from healthy children who were in the same hospital |
| SAMD01709104 | location_site | Affiliated Hospital of Jiangsu University | R3 | 0.70 | paper.body.methods | Affiliated Hospital of Jiangsu University (Jiangsu Province, China) and 11 fecal samples from healthy children who were in the same hospital |
Sequencing
22 runs over 22 samples · mean 3.13 Gbp per run (median 4.05 Gbp, total 68.90 Gbp; 22 runs with a base count) · layout PAIRED 22 · platform ILLUMINA 22 · models Illumina MiSeq (22) · 100% of runs with a Sandpiper profile · first public 2025-12-11 – 2025-12-21
Authors (0)
No author record.
Downloads
PRJDB38518.csv.gz (1.5 KB) · parquet (70.7 KB) — all 22 samples, every field with route and confidence · PRJDB38518_determinations.csv.gz (1.8 KB) — 154 evidence rows