Gut microbiome WGS in an elderly warfarin-therapy patient
Shotgun metagenomic sequencing of fecal microbiota from 1 sample from an elderly patient receiving warfarin therapy; no country or design details given beyond "other". machine-written summary
1 samples · 1 runs · Age unknown · 2020 · 35.6 Mbp / sample
One study deposited as 2 BioProjects (16 catalog samples together): PRJNA520743 · PRJNA520777 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 2 sample values (age, sex) |
| ✓ Abstract / description | 2 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 1 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 1 | 100% | 1 | |||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 1 | 100% | 1 | |||
| health_condition_detail | 1 | 100% | 1 | |||
| sex | 1 | 100% | 1 |
- The gut microbes, Enterococcus and Escherichia-Shigella, affect the responses of heart valve replacement patients to the anticoagulant warfarin. 2020 PMID 32505835 own_data
Archive description
Fecal microbiota through shotrun metagenomics
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.title · “gut microbiome from patients”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN10866816 | age_at_collection_days | 24837.0 | R1 | 0.70 | sample.attr.age | 68 |
| SAMN10866816 | health_condition | cardiometabolic_other | R4 | 0.50 | paper.abstract | inpatients undergoing heart valve replacement (HVR) |
| SAMN10866816 | health_condition_detail | 200 inpatients undergoing heart valve replacement (HVR) | R4 | 0.50 | paper.abstract | inpatients undergoing heart valve replacement (HVR) |
| SAMN10866816 | sex | male | R1 | 0.90 | sample.attr.sex | male |
Sequencing
1 runs over 1 samples · mean 35.6 Mbp per run (median 35.6 Mbp, total 35.6 Mbp; 1 runs with a base count) · layout PAIRED 1 · platform ILLUMINA 1 · models Illumina MiSeq (1) · 0% of runs with a Sandpiper profile · first public 2020-08-16
Authors (0)
No author record.
Downloads
PRJNA520743.csv.gz (912 B) · parquet (69.2 KB) — all 1 samples, every field with route and confidence · PRJNA520743_determinations.csv.gz (560 B) — 4 evidence rows