Gut microbiota in idiopathic short stature (children)
60 gut microbiome samples from children, infants, and adolescents, comparing idiopathic short stature patients with healthy controls; location not specified. machine-written summary
60 samples · 120 runs · CN · Child · 2024 · 6.65 Gbp / sample · cohort Gut microbiota and metabolic changes in children w
One study deposited as 2 BioProjects (111 catalog samples together): PRJNA808649 · PRJNA941095 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 240 sample values (age, health condition, health condition detail, sex) |
| – Abstract / description | no abstract or project description |
| ✓ Full text | 120 sample values (antibiotic exposure, collection date) · PMC11265363 |
| – Supplementary tables | no supplementary tables available (or none open access) |
| ✓ External resources | 60 sample values (country) · from GMrepo v3 |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 53 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 60 | 100% | ||||
| country | 60 | 100% | 60 | |||
| health_condition | 60 | 100% | 60 | |||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 60 | 100% | 60 | |||
| antibiotic_exposure | 60 | 100% | 60 | |||
| collection_date | 60 | 100% | 60 | |||
| health_condition_detail | 60 | 100% | 60 | |||
| sex | 60 | 100% | 60 |
- Gut microbiota and metabolic changes in children with idiopathic short stature. 2024 PMID 39039462 PMC11265363 own_data
Archive description
Our study presents a comprehensive profile of the gut microbiota in patients with ISS
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site study.title · “gut microbiota in people”
- life stage sample.attr.age · “4 (n=57/60)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN26096795 | age_at_collection_days | 1095.8 | R1 | 0.70 | sample.attr.age | 3 |
| SAMN26096795 | antibiotic_exposure | no | R3 | 0.70 | paper.fulltext.methods | Use of antibiotics, probiotics, hormones, proton pump inhibitors |
| SAMN26096795 | collection_date | 2019-09/2021-04 | R3 | 0.70 | paper.fulltext.methods | From September 2019 to April 2021, we recruited |
| SAMN26096795 | country | CN | R2 | 0.75 | external.gmrepo source | country: China |
| SAMN26096795 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:sample_alias | C1 |
| SAMN26096795 | health_condition_detail | C | R1 | 0.70 | sample.name_rule:sample_alias | C1 |
| SAMN26096795 | sex | female | R1 | 0.90 | sample.attr.sex | female |
Sequencing
120 runs over 60 samples · mean 3.33 Gbp per run (median 2.97 Gbp, total 399.44 Gbp; 120 runs with a base count) · layout PAIRED 120 · platform ILLUMINA 120 · models Illumina NovaSeq 6000 (120) · 44% of runs with a Sandpiper profile · first public 2024-03-24
Authors (0)
No author record.
Downloads
PRJNA808649.csv.gz (2.5 KB) · parquet (71.7 KB) — all 60 samples, every field with route and confidence · PRJNA808649_determinations.csv.gz (3.5 KB) — 420 evidence rows