Gut metagenome in children and adolescents
Shotgun metagenomic sequencing of 51 human gut samples from children (46), adolescents (4), and one infant; no country, health condition, or intervention information is provided. machine-written summary
51 samples · 51 runs · CN · Child · 2026 · 6.59 Gbp / sample · cohort Gut microbiota and metabolic changes in children w
One study deposited as 2 BioProjects (111 catalog samples together): PRJNA808649 · PRJNA941095 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 96 sample values (age, sex) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 153 sample values (antibiotic exposure, collection date, country) · PMC11265363 |
| ✓ Supplementary tables | 151 sample values (bmi, health condition, health condition detail) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
sex: sequence archive and supplementary table disagree for 6 samples (e.g. female vs male) — withheld.
The sources disagree on 6 samples. Where two incompatible values exist for one sample (or one person's samples disagree on sex), neither value is published: the field is left empty here, in the sample sheet and in the downloads. Both sides, with their sources, are in gut_metadata_contradictions.parquet of the data package (what counts as a contradiction).
Contradicted values (6)
| sample | field | value | other value | handling |
|---|---|---|---|---|
| SAMN33475887 | sex | female (sequence archive) | male (supplementary table) | withheld: neither value published |
| SAMN33475888 | sex | male (sequence archive) | female (supplementary table) | withheld: neither value published |
| SAMN33475889 | sex | female (sequence archive) | male (supplementary table) | withheld: neither value published |
| SAMN33475891 | sex | male (sequence archive) | female (supplementary table) | withheld: neither value published |
| SAMN33475893 | sex | female (sequence archive) | male (supplementary table) | withheld: neither value published |
| SAMN33475896 | sex | male (sequence archive) | female (supplementary table) | withheld: neither value published |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 51 | 100% | ||||
| country | 51 | 100% | 51 | |||
| health_condition | 51 | 100% | 51 | |||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 51 | 100% | 51 | |||
| antibiotic_exposure | 51 | 100% | 51 | |||
| collection_date | 51 | 100% | 51 | |||
| health_condition_detail | 51 | 100% | 51 | |||
| bmi | 49 | 96% | 49 | |||
| sex | 45 | 88% | 45 |
- Gut microbiota and metabolic changes in children with idiopathic short stature. 2024 PMID 39039462 PMC11265363 own_data
Archive description
shotgun metagenomic sequencing of Homo sapiens
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by sonnet_x2 with confidence 0.55. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site sample.attr.tissue · “stool (n=51/51)”
- life stage sample.attr.age · “6.08 (n=44/51)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN33475851 | age_at_collection_days | 1764.0 | R1 | 0.85 | sample.attr.age | 4.83 |
| SAMN33475851 | antibiotic_exposure | no | R3 | 0.70 | paper.body.methods_results | Use of antibiotics, probiotics, hormones, proton pump inhibitors, insulin sensitizers or growth-promoting herbs in the previous three months |
| SAMN33475851 | bmi | 14.55 | R2 | 0.85 | paper.supp.12887_2024_4944_MOESM2_ESM.xlsx[clinical_information][BMI] | 14.55 |
| SAMN33475851 | collection_date | 2019-09/2021-04 | R3 | 0.70 | paper.fulltext.methods | From September 2019 to April 2021, we recruited |
| SAMN33475851 | country | CN | R3 | 0.70 | paper.fulltext.abstract | We recruited 51 Chinese subjects |
| SAMN33475851 | health_condition | other_disease | R2 | 0.85 | paper.supp.12887_2024_4944_MOESM2_ESM.xlsx[clinical_information][Group] | ISS |
| SAMN33475851 | health_condition_detail | ISS | R2 | 0.85 | paper.supp.12887_2024_4944_MOESM2_ESM.xlsx[clinical_information][Group] | ISS |
| SAMN33475851 | sex | female | R1 | 0.90 | sample.attr.sex | female |
Sequencing
51 runs over 51 samples · mean 6.62 Gbp per run (median 6.59 Gbp, total 337.86 Gbp; 51 runs with a base count) · layout PAIRED 51 · platform ILLUMINA 51 · models Illumina NovaSeq 6000 (51) · 0% of runs with a Sandpiper profile · first public 2026-04-19
Authors (0)
No author record.
Downloads
PRJNA941095.csv.gz (2.6 KB) · parquet (72.2 KB) — all 51 samples, every field with route and confidence · PRJNA941095_determinations.csv.gz (3.8 KB) — 400 evidence rows