Other body site other_site
Eye/ear and other stated human sites not covered above.
Membership rule (config/scope.yaml): other_site in body_sites OR eye_ear in body_sites. Memberships derive deterministically from host, body sites, life stages and assay; a study can belong to several scopes.
278
studies
45,273
runs
25,908
BioSamples
14,551
BioSamples with harvested attributes — site known 52 %, age 11 %, sex 20 %
14,761
runs with a Sandpiper profile (33 %)
273
classified · 5 pending
Open in the registry explorer (pre-filtered) All scopes
Body sites and life stages within the scope
Primary body site (body_site_primary)
| value | studies | runs |
|---|---|---|
| other_site | 131 | 8,670 |
| eye_ear | 53 | 4,438 |
| multi_site | 28 | 24,478 |
| gut_stool | 27 | 2,425 |
| skin | 10 | 1,883 |
| oral | 9 | 1,403 |
| blood_tissue | 7 | 406 |
| unknown_site | 6 | 596 |
| vaginal_urogenital | 3 | 526 |
| nasal_nasopharyngeal | 2 | 271 |
| respiratory_lower | 2 | 177 |
Primary life stage (life_stage_primary)
| value | studies | runs |
|---|---|---|
| unknown_age | 209 | 25,600 |
| adult | 42 | 3,429 |
| child | 17 | 1,937 |
| elderly | 3 | 132 |
| adolescent | 2 | 7 |
| infant | 2 | 14,081 |
| mixed_ages | 2 | 32 |
| neonate | 1 | 55 |
Assay (assay)
| value | studies | runs |
|---|---|---|
| shotgun_dna | 204 | 26,312 |
| other | 44 | 3,252 |
| isolate_genome | 12 | 125 |
| amplicon_misfiled | 8 | 1,123 |
| mixed | 5 | 14,310 |
| unknown | 4 | 147 |
| rna | 1 | 4 |
Classification stage (classification_stage)
| value | studies | runs |
|---|---|---|
| sonnet_x2 | 160 | 16,070 |
| opus_adjudicated | 94 | 27,335 |
| deterministic_prior | 9 | 1,299 |
| curator_audit | 5 | 139 |
| pending | 5 | 135 |
| owner_decision | 3 | 212 |
| deterministic_rule | 2 | 83 |
Largest studies by BioSamples (top 25)
| study | title | BioSamples | runs | sites | stages | assay | stage |
|---|---|---|---|---|---|---|---|
| PRJEB11419 ENA | American Gut Project | 8,060 | 13,995 | gut_stool;oral;skin;nasal_nasopharyngeal;other_site | infant;adult;elderly | mixed | opus_adjudicated |
| PRJEB44861 ENA | Stronger_SAFE__Understanding_transmission_and_intervention_trials_for_an_enhanced_safe_strategy_for_Trachom... | 1,031 | 1,061 | eye_ear;other_site | child | shotgun_dna | sonnet_x2 |
| PRJEB11486 ENA | A Universal Microbial Clock for Estimating the Postmortem Interval Metcalf SHSU April 2012 exp | 997 | 1,081 | skin;other_site | unknown_age | other | sonnet_x2 |
| PRJNA756701 ENA | Foregut Microbiome and Risk of Gastric Intestinal Metaplasia, and Gastric Cancer Risk | 776 | 776 | oral;other_site | adult | shotgun_dna | sonnet_x2 |
| PRJNA217052 ENA | Fiji COMP | 523 | 8,503 | gut_stool;oral;skin;other_site | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA378504 ENA | Periprosthetic Joint Metagenome Raw sequence reads | 471 | 471 | other_site | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA1404219 ENA | Vancomycin-resistant Enterococcus often spreads from hospitalized patients into the local environment and... | 415 | 415 | other_site | unknown_age | amplicon_misfiled | sonnet_x2 |
| PRJNA1174735 ENA | Tissue microbiome characterization in Gastric cancer | 384 | 384 | other_site | unknown_age | amplicon_misfiled | sonnet_x2 |
| PRJNA1126668 ENA | Bacterial strain-sharing across human, animal, and the environment in Nairobi | 321 | 321 | gut_stool;other_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA913604 ENA | Clinical evaluation of metagenomic next-generation sequencing method for the diagnosis of suspected... | 300 | 300 | other_site;blood_tissue | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA743171 ENA | Culture-free detection of antibiotic resistance markers from native patient samples by hybrid capture sequencing | 292 | 292 | vaginal_urogenital;other_site;blood_tissue | unknown_age | mixed | sonnet_x2 |
| PRJEB12636 ENA | Investigation of P. acnes levels in NGS data from cancer samples | 267 | 267 | skin;other_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJEB36983 ENA | Survey of differential DNA preservation in archaeological remains across multiple skeletal elements | 254 | 254 | blood_tissue;other_site;skin;oral | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA727021 ENA | Whole genome sequencing of juvenile respiratory microbiome in African children | 248 | 248 | respiratory_lower;nasal_nasopharyngeal;blood_tissue;other_site | child | shotgun_dna | sonnet_x2 |
| PRJNA1238507 ENA | Nanopore-based targeted next-generation sequencing (tNGS): a versatile technology specialized in detecting... | 242 | 242 | respiratory_lower;blood_tissue;other_site | unknown_age | other | opus_adjudicated |
| PRJEB55149 ENA | OSM - Determination of the intra- and interindividuality as well as the stability of the ocular surface... | 234 | 234 | eye_ear | adult | shotgun_dna | sonnet_x2 |
| PRJNA982563 ENA | Daily occupational exposure in swine farm alters human skin microbiota and antibiotic resistome | 232 | 232 | skin;other_site;gut_stool;nasal_nasopharyngeal | unknown_age | shotgun_dna | sonnet_x2 |
| PRJEB80323 ENA | Sequencing of mtDNA captures of sediments from the Pleistocene layers of the South Chamber of Denisova Cave. | 231 | 391 | other_site | unknown_age | other | sonnet_x2 |
| PRJNA248889 ENA | The microbiome of the conjunctiva in patients with and without clinical symptoms of trachoma | 230 | 242 | eye_ear | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1372133 ENA | Metagenomic sequencing of fecal and beef samples Raw sequence reads | 226 | 226 | gut_stool;other_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJEB38528 ENA | Placenta biopsies, saliva samples, vaginal and rectal swabs collected at delivery for babies at term | 223 | 223 | oral;vaginal_urogenital;gut_stool;other_site;multi_site | adult | shotgun_dna | sonnet_x2 |
| PRJNA1391352 ENA | Performance of shotgun metagenomic sequencing for detection of fungi and parasites in a broad range of... | 204 | 204 | gut_stool;blood_tissue;respiratory_lower;other_site | unknown_age | other | sonnet_x2 |
| PRJNA609403 ENA | The Value of High-throughput Sequencing in the Diagnosis of Infectious Diseases of the Central Nervous System | 204 | 204 | other_site;blood_tissue | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1424541 ENA | Unveiling pathogens and contaminants: refining metagenomics for clinical diagnostics | 199 | 199 | blood_tissue;other_site;gut_stool | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA436717 ENA | human synovial fluid Metagenome | 180 | 180 | other_site | unknown_age | shotgun_dna | opus_adjudicated |
Counts are computed from data/registry_studies.parquet at build time (release R2026.25).