Vaginal / urogenital vaginal_urogenital
Vaginal, cervical, urinary and seminal shotgun metagenomes.
Membership rule (config/scope.yaml): vaginal_urogenital in body_sites. Memberships derive deterministically from host, body sites, life stages and assay; a study can belong to several scopes.
289
studies
67,023
runs
64,720
BioSamples
36,887
BioSamples with harvested attributes — site known 41 %, age 40 %, sex 14 %
14,429
runs with a Sandpiper profile (22 %)
289
classified · 0 pending
Open in the registry explorer (pre-filtered) All scopes
Body sites and life stages within the scope
Primary body site (body_site_primary)
| value | studies | runs |
|---|---|---|
| vaginal_urogenital | 228 | 38,308 |
| multi_site | 30 | 16,310 |
| gut_stool | 25 | 11,397 |
| skin | 2 | 705 |
| unknown_site | 2 | 244 |
| other_site | 1 | 57 |
| respiratory_lower | 1 | 2 |
Primary life stage (life_stage_primary)
| value | studies | runs |
|---|---|---|
| adult | 130 | 43,064 |
| unknown_age | 123 | 11,818 |
| infant | 16 | 10,093 |
| elderly | 6 | 495 |
| mixed_ages | 5 | 586 |
| child | 4 | 224 |
| adolescent | 3 | 154 |
| neonate | 2 | 589 |
Assay (assay)
| value | studies | runs |
|---|---|---|
| shotgun_dna | 198 | 43,015 |
| other | 50 | 4,705 |
| amplicon_misfiled | 16 | 11,465 |
| isolate_genome | 14 | 216 |
| amplicon | 5 | 2,257 |
| mixed | 4 | 3,835 |
| rna | 1 | 452 |
| unknown | 1 | 1,078 |
Classification stage (classification_stage)
| value | studies | runs |
|---|---|---|
| sonnet_x2 | 184 | 23,018 |
| deterministic_prior | 50 | 24,172 |
| opus_adjudicated | 50 | 16,832 |
| deterministic_rule | 2 | 282 |
| owner_decision | 2 | 1,601 |
| curator_audit | 1 | 1,118 |
Largest studies by BioSamples (top 25)
| study | title | BioSamples | runs | sites | stages | assay | stage |
|---|---|---|---|---|---|---|---|
| PRJNA1460779 ENA | The Vaginal Microbiome as a Reservoir for Uropathogens: A Population-Scale Metagenomic Study of Women... | 10,003 | 10,003 | vaginal_urogenital | adult | shotgun_dna | deterministic_prior |
| PRJEB81814 ENA | The Swedish Maternal Microbiome project | 7,510 | 8,243 | vaginal_urogenital;gut_stool;oral | adult;infant | amplicon_misfiled | opus_adjudicated |
| PRJNA1468137 ENA | Maternal influences on infant gut microbiome and health | 4,749 | 4,749 | gut_stool;vaginal_urogenital;milk | infant;adult | shotgun_dna | deterministic_prior |
| PRJEB37731 ENA | Effects of the menstrual cycle and hormonal contraceptives on the human microbiome | 2,825 | 2,825 | gut_stool;oral;vaginal_urogenital | adult | mixed | sonnet_x2 |
| PRJEB77434 ENA | Vaginal Microbiota Dynamics in Pregnancy | 1,959 | 1,959 | vaginal_urogenital | adult | shotgun_dna | deterministic_prior |
| PRJEB111647 ENA | Restoration of Microbiota in Newborns | 1,441 | 1,441 | gut_stool;skin;vaginal_urogenital;milk | infant;neonate;child;adult | shotgun_dna | deterministic_prior |
| PRJEB74625 ENA | VaMiGyn study: characterizing the vaginal microbiome | 1,273 | 1,273 | vaginal_urogenital | adult | shotgun_dna | opus_adjudicated |
| PRJEB14941 ENA | The microbiota at multiple body sites during pregnancy in a rural Tanzanian population and the effects of... | 1,118 | 1,118 | gut_stool;oral;vaginal_urogenital;milk | adult;infant | amplicon | curator_audit |
| PRJNA1249435 ENA | Neurobiological and neurocognitive consequences of diverse microbiome functional trajectories | 1,109 | 1,109 | gut_stool;vaginal_urogenital | infant;child;adult;neonate | shotgun_dna | deterministic_prior |
| PRJEB76678 ENA | Metagenomic_surveillance_of_sexually_transmitted_infections_and_the_microbiome_in_primary_care_in_Zimbabwe__IPSAZ_ | 1,078 | 1,078 | vaginal_urogenital | adult | shotgun_dna | opus_adjudicated |
| PRJNA430482 ENA | Multi Omic Microbiome Study: Pregnancy Initiative (MOMS-PI) | 1,078 | 1,078 | vaginal_urogenital | adult;neonate | unknown | opus_adjudicated |
| PRJEB10914 ENA | Developmental Ecology of the Human Microbiome - Restoration Study of babies. | 1,016 | 1,016 | gut_stool;oral;skin;vaginal_urogenital | infant;adult | amplicon | owner_decision |
| PRJNA908820 ENA | 1000 16S Sequencing Data of Human Vaginal Microorganisms | 1,000 | 1,000 | vaginal_urogenital | unknown_age | amplicon_misfiled | sonnet_x2 |
| PRJEB78736 ENA | Understanding_the_aetiology_of_genital_ulcer_and_the_genital_microbiome__MAGUS_M_ | 981 | 982 | vaginal_urogenital | unknown_age | shotgun_dna | sonnet_x2 |
| PRJEB59811 ENA | Microbial Diversity in the Vaginal Microbiota by Whole-Genome Metagenomics | 749 | 749 | vaginal_urogenital | adult;neonate | shotgun_dna | deterministic_prior |
| PRJNA1219227 ENA | Unveiling Mechanisms in Vaginal Microbiome Dynamics through Model-Driven Analysis | 702 | 702 | vaginal_urogenital | adult | shotgun_dna | sonnet_x2 |
| PRJNA1355011 ENA | Vaginal microbiome and metabolome integration reveals ecological mechanisms and predictive biomarkers for... | 697 | 697 | vaginal_urogenital | adult | shotgun_dna | opus_adjudicated |
| PRJNA675704 ENA | gQlab Metagenome | 585 | 585 | gut_stool;vaginal_urogenital | adult | amplicon_misfiled | owner_decision |
| PRJNA706070 ENA | Longitudinal Study of Vaginal Flora | 580 | 580 | vaginal_urogenital | adult | shotgun_dna | sonnet_x2 |
| PRJNA734653 ENA | Contribution of immunoregulatory molecules in cervical cancer: gene polymorphism, mRNA expression profile,... | 570 | 570 | vaginal_urogenital | unknown_age | other | sonnet_x2 |
| PRJNA762089 ENA | Zambia Preterm Birth Prevention Study (ZAPPS) | 562 | 562 | vaginal_urogenital | adult | shotgun_dna | opus_adjudicated |
| PRJNA553595 ENA | Biobehavioral Determinants of the Microbiome and Preterm Birth in Black Women | 552 | 552 | gut_stool;oral;vaginal_urogenital | adult | other | sonnet_x2 |
| PRJNA657818 ENA | Delivery mode impacts newborn gut colonization efficiency | 526 | 526 | gut_stool;vaginal_urogenital | neonate;adult | mixed | opus_adjudicated |
| PRJNA400628 ENA | Escherichia coli Genome sequencing and assembly | 515 | 721 | gut_stool;vaginal_urogenital | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1312828 ENA | The role of host-microbial interactions in altering preterm birth risk among black women | 458 | 458 | vaginal_urogenital | adult | shotgun_dna | sonnet_x2 |
Counts are computed from data/registry_studies.parquet at build time (release R2026.25).