Industrialised vs non-industrialised comparisons
Lifestyle · collection id industrialization-gradients
Cohorts designed around an urbanisation or industrialisation contrast: Cameroon and African rural–urban gradients, Ghanaian and Malagasy villages (Pasolli 2019), isolated Honduran villages, Fijian villages, Orang Asli, the Baiga tribe and Irish Travellers.
Open in the sample explorer (2,651 samples)
3
studies with member samples
2,651
member samples in this release
Membership rule
Listed studies with no member samples after the filters: PRJEB30834, PRJNA686265, PRJNA529124, PRJNA1356541, PRJNA217052, PRJEB36820, PRJNA1470913.
Pasolli 2019 Ethiopian and Tanzanian cohorts were not found under their own BioProjects in the 1.11.0 catalog. Tsimane (Bolivia, PRJNA574920) and Hutterite deposits are 16S amplicon only (Davenport 2014 and later; owner 2026-10-01), so neither population can appear in a shotgun catalog (see COLLECTIONS_REPORT.md).
Composition
Age category| unknown | 1,889 |
| adult | 510 |
| child | 174 |
| adolescent | 52 |
| elderly | 26 |
Health condition| healthy_control Healthy / control | 464 |
| other_infection Other infection (HIV | 298 |
Lifestyle| rural_non_industrialized Rural | 2,001 |
| indigenous_community Indigenous community (subsistence not specified) | 594 |
| urban_industrialized Urban / industrialized (only when stated by the source) | 56 |
Member studies (3)
| Study | Title | Member samples | First public |
|---|
| PRJNA999635 | Gut Microbiome of isolated villages in rural Honduras | 1,889 | 2023 |
| PRJNA797994 | Gut Microbiome of Helminth Infected Indigenous Malaysians Is Context Dependent | 650 | 2022 |
| PRJNA485056 | Metagenomic sequencing of stool samples from rural communities from north-eastern Madagascar | 112 | 2018 |
References