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Antibiotic intervention and recovery cohorts
Study design · collection id antibiotic-intervention-cohorts
Studies in which antibiotics were administered by design or documented as the exposure of interest, with before/after shotgun sampling: healthy-volunteer courses (cefprozil, ciprofloxacin, beta-lactams), probiotic-after-antibiotic trials, travellers'-diarrhoea regimens, mass azithromycin distribution and preterm-infant exposure.
Open in the sample explorer (5,520 samples)
13
studies with member samples
5,520
member samples in this release
Membership rule
| Studies | PRJEB8094, PRJNA974858, PRJNA1025016, PRJEB105465, PRJNA922086, PRJNA1074135, PRJNA450709 (not in this release), PRJEB27325 (not in this release), PRJNA945408, PRJNA1106565, PRJNA1364313, PRJNA917819, PRJNA993161, PRJNA807448, PRJNA1337442 |
Listed studies with no member samples after the filters: PRJNA450709, PRJEB27325.
Composition
Age category
| adult | 2,934 |
| infant | 1,223 |
| unknown | 1,041 |
| neonate | 266 |
| elderly | 54 |
| adolescent | 2 |
Country
| US | 2,386 |
| SE | 548 |
| AU | 459 |
| NE | 450 |
| FR | 335 |
| CN | 296 |
Health condition
| healthy_control Healthy / control | 3,400 |
| gi_infection_or_diarrhoea GI infection / diarrhoea (incl. C. difficile) | 416 |
| intervention_cohort Intervention cohort (drug | 335 |
| other_infection Other infection (HIV | 263 |
Lifestyle
| military Military personnel / training | 416 |
Member studies (13)
| Study | Title | Member samples | First public |
|---|---|---|---|
| PRJNA974858 | Temporal shotgun sequencing of the gut microbiota of healthy adults taking ciprofloxacin | 1,040 | 2024 |
| PRJNA1106565 | Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy term infants | 669 | 2024 |
| PRJEB105465 | Effects of antibiotic treatment on normal intestinal flora (ARG-study) | 548 | 2026 |
| PRJNA807448 | The Antibiotics and Immune Responses Study | 459 | 2025 |
| PRJNA1337442 | Effect of Mass Azithromycin Distribution on Antibiotic Resistance in the Gut and Nasopharynx: A Cluster-Randomized Trial | 450 | 2026 |
| PRJNA945408 | Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prevent TD and TrEAT TD | 416 | 2023 |
| PRJNA1364313 | Antibiotic impact on preterm infant microbiome maturation | 361 | 2025 |
| PRJNA922086 | Deleterious impact of beta-lactam antibiotics on intestinal microbiome of human healthy volunteers and protection with co-administration of the DAV132 colon-targeted adsorbent. | 335 | 2024 |
| PRJNA993161 | Impact of complex oligosaccharides and a probiotic on the antibiotic-treated human microbiome | 316 | 2023 |
| PRJNA917819 | Probiotics modulation of post-antibiotic gut microbiome in healthy population | 296 | 2025 |
| PRJNA1074135 | Long-term effects of ciprofloxacin treatment on the gastrointestinal and oropharyngeal microbiome are more pronounced after longer antibiotic courses | 295 | 2024 |
| PRJNA1025016 | Commensal Antimicrobial Resistance Mediates Microbiome Resilience to Antibiotic Disruption | 263 | 2024 |
| PRJEB8094 | The initial state of the human gut microbiome determines its reshaping by antibiotics | 72 | 2015 |