Child / adolescent gut (3–18 y) gut_child
Human gut/stool shotgun metagenomes from children and adolescents.
Membership rule (config/scope.yaml): gut_stool in body_sites AND (child in life_stages OR adolescent in life_stages). Memberships derive deterministically from host, body sites, life stages and assay; a study can belong to several scopes.
406
studies
147,159
runs
117,487
BioSamples
61,863
BioSamples with harvested attributes — site known 79 %, age 24 %, sex 57 %
49,395
runs with a Sandpiper profile (34 %)
406
classified · 0 pending
Open in the registry explorer (pre-filtered) All scopes
Body sites and life stages within the scope
Primary body site (body_site_primary)
| value | studies | runs |
|---|---|---|
| gut_stool | 389 | 145,526 |
| multi_site | 13 | 1,401 |
| blood_tissue | 1 | 47 |
| eye_ear | 1 | 80 |
| oral | 1 | 82 |
| other_site | 1 | 23 |
Primary life stage (life_stage_primary)
| value | studies | runs |
|---|---|---|
| child | 233 | 34,970 |
| infant | 106 | 59,618 |
| adult | 28 | 4,713 |
| mixed_ages | 13 | 45,571 |
| adolescent | 12 | 699 |
| unknown_age | 10 | 1,392 |
| neonate | 3 | 137 |
| elderly | 1 | 59 |
Assay (assay)
| value | studies | runs |
|---|---|---|
| shotgun_dna | 346 | 140,690 |
| other | 24 | 2,003 |
| amplicon_misfiled | 14 | 2,919 |
| isolate_genome | 10 | 253 |
| mixed | 6 | 628 |
| amplicon | 4 | 586 |
| rna | 1 | 2 |
| unknown | 1 | 78 |
Classification stage (classification_stage)
| value | studies | runs |
|---|---|---|
| deterministic_prior | 214 | 71,863 |
| sonnet_x2 | 126 | 59,215 |
| opus_adjudicated | 34 | 7,163 |
| deterministic_rule | 16 | 5,246 |
| owner_decision | 13 | 3,242 |
| curator_audit | 3 | 430 |
Largest studies by BioSamples (top 25)
| study | title | BioSamples | runs | sites | stages | assay | stage |
|---|---|---|---|---|---|---|---|
| PRJNA416160 ENA | The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study | 21,012 | 43,327 | gut_stool;blood_tissue | neonate;infant;child | shotgun_dna | sonnet_x2 |
| PRJNA400115 ENA | TEDDY Microbiome | 12,266 | 13,245 | gut_stool | infant;neonate;child | shotgun_dna | deterministic_prior |
| PRJEB108450 ENA | Exploring Fecal Microbiome in the CHILD COVID-19 sub-project | 4,102 | 4,348 | gut_stool | child;adult | shotgun_dna | deterministic_rule |
| PRJNA838575 ENA | CHILD Infant Stool Raw sequence reads | 2,934 | 2,934 | gut_stool | infant;child | shotgun_dna | deterministic_prior |
| PRJEB46788 ENA | Codiversification of gut microbiota with humans | 2,750 | 2,750 | gut_stool | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJNA943687 ENA | Faecal metagenome of children with autism spectrum disorder and children that are neurotypical | 2,089 | 2,089 | gut_stool | child | shotgun_dna | deterministic_prior |
| PRJNA398089 ENA | Longitudinal Multi’omics of the Human Microbiome in Inflammatory Bowel Disease | 2,041 | 2,041 | gut_stool;blood_tissue | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJEB83236 ENA | SEPSIS Human Microbiome Study | 1,917 | 1,917 | gut_stool;milk;oral;skin | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJEB106892 ENA | Chain_Ncc_Metagenomes_Release | 1,851 | 1,853 | gut_stool | infant;child | shotgun_dna | deterministic_prior |
| PRJNA695570 ENA | Human gut metagenomes of healthy mothers and their children | 1,767 | 1,767 | gut_stool | child;adult;infant | shotgun_dna | deterministic_prior |
| PRJNA1137057 ENA | Sequential co-assembly reduces computational resources and errors in metagenome-assembled genomes | 1,618 | 1,618 | gut_stool | child | shotgun_dna | sonnet_x2 |
| PRJEB28671 ENA | A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia | 1,616 | 1,701 | gut_stool | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJEB111647 ENA | Restoration of Microbiota in Newborns | 1,441 | 1,441 | gut_stool;skin;vaginal_urogenital;milk | infant;neonate;child;adult | shotgun_dna | deterministic_prior |
| PRJNA1081952 ENA | BRISC microbiome sub study | 1,422 | 1,736 | gut_stool | infant;child | shotgun_dna | deterministic_prior |
| PRJEB24771 ENA | Legumes and Growth Data | 1,392 | 1,392 | gut_stool | infant;child | shotgun_dna | opus_adjudicated |
| PRJNA510445 ENA | The relationship of fecal microbiomes and nutritional status in cystic fibrosis | 1,279 | 1,279 | gut_stool | infant;child | shotgun_dna | deterministic_prior |
| PRJNA1391538 ENA | Pre-HCT Resistome Disruption Predicts ESBL Gene Expansion in Pediatric Transplant Recipients: A... | 1,242 | 1,242 | gut_stool | child;infant;adolescent | shotgun_dna | sonnet_x2 |
| PRJNA1060349 ENA | Weaning accelerates and transforms within-host adaptation in the infant gut microbiome | 1,197 | 1,197 | gut_stool | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJNA497734 ENA | Longitudinal gut microbiome sequence data combined from several DIABIMMUNE microbiome studies | 1,154 | 1,154 | gut_stool | infant;neonate;child | shotgun_dna | deterministic_prior |
| PRJNA1249435 ENA | Neurobiological and neurocognitive consequences of diverse microbiome functional trajectories | 1,109 | 1,109 | gut_stool;vaginal_urogenital | infant;child;adult;neonate | shotgun_dna | deterministic_prior |
| PRJNA1403004 ENA | Shotgun metagenomic sequencing of infant stool samples from the CHILD Cohort Study | 1,018 | 1,018 | gut_stool | infant;child | shotgun_dna | deterministic_prior |
| PRJNA890666 ENA | The gut metagenome during hematopoietic cell transplantation in children | 1,009 | 1,009 | gut_stool | infant;child;adolescent | shotgun_dna | opus_adjudicated |
| PRJNA1072081 ENA | Identifying Biomarkers and Trajectories of Typical Neurodevelopment in Children, the BRAINRISE Initiative | 961 | 961 | gut_stool | child;infant | shotgun_dna | deterministic_prior |
| PRJNA1508239 ENA | Longitudinal stool metagenomes from children with acute lymphoblastic leukemia during chemotherapy | 873 | 873 | gut_stool | infant;child | shotgun_dna | opus_adjudicated |
| PRJNA1157208 ENA | Lactiplantibacillus plantarum for the Prevention of GI aGVHD. A Report from the Childrens Oncology Group | 859 | 859 | gut_stool | child;adolescent | shotgun_dna | opus_adjudicated |
Counts are computed from data/registry_studies.parquet at build time (release R2026.25).