Adult gut (≥ 18 y) gut_adult
Human gut/stool shotgun metagenomes from adults and the elderly — first curated scope after infant_gut (external gold curatedMetagenomicData).
Membership rule (config/scope.yaml): gut_stool in body_sites AND (adult in life_stages OR elderly in life_stages). Memberships derive deterministically from host, body sites, life stages and assay; a study can belong to several scopes.
1,389
studies
369,164
runs
315,610
BioSamples
251,401
BioSamples with harvested attributes — site known 48 %, age 28 %, sex 26 %
194,227
runs with a Sandpiper profile (53 %)
1,387
classified · 2 pending
Open in the registry explorer (pre-filtered) All scopes
Body sites and life stages within the scope
Primary body site (body_site_primary)
| value | studies | runs |
|---|---|---|
| gut_stool | 1,332 | 328,068 |
| multi_site | 35 | 34,294 |
| blood_tissue | 11 | 2,307 |
| oral | 3 | 126 |
| respiratory_lower | 2 | 639 |
| unknown_site | 2 | 2,843 |
| vaginal_urogenital | 2 | 170 |
| other_site | 1 | 23 |
| skin | 1 | 694 |
Primary life stage (life_stage_primary)
| value | studies | runs |
|---|---|---|
| adult | 1,182 | 279,299 |
| infant | 92 | 60,808 |
| elderly | 41 | 6,162 |
| unknown_age | 36 | 11,905 |
| child | 17 | 7,166 |
| mixed_ages | 17 | 2,740 |
| neonate | 4 | 1,084 |
Assay (assay)
| value | studies | runs |
|---|---|---|
| shotgun_dna | 1,251 | 308,527 |
| other | 49 | 7,684 |
| amplicon_misfiled | 41 | 13,588 |
| mixed | 20 | 32,769 |
| amplicon | 18 | 4,576 |
| isolate_genome | 5 | 83 |
| unknown | 4 | 1,935 |
| rna | 1 | 2 |
Classification stage (classification_stage)
| value | studies | runs |
|---|---|---|
| deterministic_prior | 704 | 197,431 |
| sonnet_x2 | 534 | 111,825 |
| opus_adjudicated | 91 | 44,081 |
| owner_decision | 38 | 6,263 |
| curator_audit | 15 | 4,318 |
| deterministic_rule | 5 | 5,042 |
| pending | 2 | 204 |
Largest studies by BioSamples (top 25)
| study | title | BioSamples | runs | sites | stages | assay | stage |
|---|---|---|---|---|---|---|---|
| PRJEB75464 ENA | PREDICT 3 UK22A | 12,353 | 12,353 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJEB51353 ENA | Human gut metagenomes of SCAPIS Uppsala and Malmo | 9,819 | 9,977 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJEB75463 ENA | PREDICT 3 US22A | 8,469 | 8,469 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJEB11419 ENA | American Gut Project | 8,060 | 13,995 | gut_stool;oral;skin;nasal_nasopharyngeal;other_site | infant;adult;elderly | mixed | opus_adjudicated |
| PRJEB81814 ENA | The Swedish Maternal Microbiome project | 7,510 | 8,243 | vaginal_urogenital;gut_stool;oral | adult;infant | amplicon_misfiled | opus_adjudicated |
| PRJEB23147 ENA | Human_colon_16S | 5,249 | 5,969 | gut_stool | adult | shotgun_dna | sonnet_x2 |
| PRJNA1468137 ENA | Maternal influences on infant gut microbiome and health | 4,749 | 4,749 | gut_stool;vaginal_urogenital;milk | infant;adult | shotgun_dna | deterministic_prior |
| PRJNA1347413 ENA | Metagenomic data from the ASPREE-XT study | 4,711 | 4,711 | gut_stool | adult;elderly | shotgun_dna | deterministic_prior |
| PRJEB108450 ENA | Exploring Fecal Microbiome in the CHILD COVID-19 sub-project | 4,102 | 4,348 | gut_stool | child;adult | shotgun_dna | deterministic_rule |
| PRJEB32762 ENA | iMSMS Baranzini data | 3,765 | 4,797 | gut_stool | adult | mixed | sonnet_x2 |
| PRJEB37731 ENA | Effects of the menstrual cycle and hormonal contraceptives on the human microbiome | 2,825 | 2,825 | gut_stool;oral;vaginal_urogenital | adult | mixed | sonnet_x2 |
| PRJEB40903 ENA | DNA extraction comparison testing 2019-2020 | 2,770 | 2,770 | gut_stool;skin;oral | adult | shotgun_dna | opus_adjudicated |
| PRJEB46788 ENA | Codiversification of gut microbiota with humans | 2,750 | 2,750 | gut_stool | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJEB97686 ENA | BMT CTN 1801 microbiome data | 2,631 | 5,024 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJEB110772 ENA | Gut microbiota associates with frailty in older women | 2,398 | 2,398 | gut_stool | adult;elderly | shotgun_dna | deterministic_prior |
| PRJNA398089 ENA | Longitudinal Multi’omics of the Human Microbiome in Inflammatory Bowel Disease | 2,041 | 2,041 | gut_stool;blood_tissue | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJEB47383 ENA | Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance | 2,018 | 2,018 | gut_stool;oral | adult | shotgun_dna | opus_adjudicated |
| PRJEB91658 ENA | COLO-COHORT: Exploring Gut Microbiome Associations of Colorectal Health and Early Colorectal Cancer Detection | 1,970 | 1,970 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJEB83236 ENA | SEPSIS Human Microbiome Study | 1,917 | 1,917 | gut_stool;milk;oral;skin | infant;child;adult | shotgun_dna | deterministic_prior |
| PRJNA1157371 ENA | AWI-Gen 2 Microbiome Project | 1,820 | 1,820 | gut_stool | adult | shotgun_dna | sonnet_x2 |
| PRJEB115010 ENA | NCRAD ADRC Samples - Aug 2022, Aug 2023 (Native American samples removed) | 1,792 | 1,792 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJNA695570 ENA | Human gut metagenomes of healthy mothers and their children | 1,767 | 1,767 | gut_stool | child;adult;infant | shotgun_dna | deterministic_prior |
| PRJNA1004982 ENA | Gut microbiome associates with phenotypic manifestations of post-acute COVID-19 syndrome | 1,676 | 1,676 | gut_stool | adult | shotgun_dna | deterministic_prior |
| PRJNA1235197 ENA | Microbiome signatures linked to cancer and treatment adverse events in a real-world cohort | 1,651 | 1,651 | gut_stool | adult;elderly | shotgun_dna | sonnet_x2 |
| PRJEB28671 ENA | A_novel_nano_iron_supplement__IHAT__to_safely_combact_iron_deficiency_and_anemia | 1,616 | 1,701 | gut_stool | infant;child;adult | shotgun_dna | deterministic_prior |
Counts are computed from data/registry_studies.parquet at build time (release R2026.25).