What changed in R2026.12 (package 1.12.0, 2026-09-29)
1,168,708
sample × field values added (365,435 samples, 2,072 studies)
0
catalog studies added
0
registry studies added
Values added, by field
| field | values | samples | studies |
|---|---|---|---|
| collection_date | 324,303 | 324,303 | 1,909 |
| latitude | 223,569 | 223,569 | 1,382 |
| longitude | 223,569 | 223,569 | 1,382 |
| location_region | 190,665 | 190,665 | 1,271 |
| location_locality | 135,715 | 135,715 | 1,032 |
| location_site | 55,477 | 55,477 | 395 |
| lifestyle_detail | 7,716 | 7,716 | 60 |
| lifestyle | 7,694 | 7,694 | 62 |
By route: R1 1,057,345 · R3 79,021 · R4 32,300 · R2 42
Studies with the most added values
| study | title | values | samples touched | samples in study | fields | routes |
|---|---|---|---|---|---|---|
| PRJEB51353 | Human gut metagenomes of SCAPIS Uppsala and Malmo | 44,246 | 9,817 | 9,819 | collection_date, latitude, location_locality, location_region, longitude | R1 |
| PRJEB108450 | Exploring Fecal Microbiome in the CHILD COVID-19 sub-project | 16,043 | 4,102 | 4,102 | collection_date, latitude, location_region, longitude | R1 |
| PRJEB37731 | Effects of the menstrual cycle and hormonal contraceptives on the human microbiome | 15,384 | 2,824 | 2,825 | collection_date, latitude, location_locality, location_region, location_site, longitude | R1, R3, R4 |
| PRJNA1347413 | Metagenomic data from the ASPREE-XT study | 14,133 | 4,711 | 4,711 | collection_date, latitude, longitude | R1 |
| PRJEB75464 | PREDICT 3 UK22A | 12,349 | 12,349 | 12,353 | collection_date | R1 |
| PRJEB75462 | PREDICT 3 US21 | 11,795 | 11,795 | 11,797 | collection_date | R1 |
| PRJNA1235197 | Microbiome signatures linked to cancer and treatment adverse events in a real-world cohort | 10,547 | 1,651 | 1,651 | collection_date, latitude, lifestyle, lifestyle_detail, location_region, location_site, longitude | R1, R4 |
| PRJEB110772 | Gut microbiota associates with frailty in older women | 9,592 | 2,398 | 2,398 | collection_date, latitude, location_region, longitude | R1 |
| PRJNA416160 | The Environmental Determinants of Diabetes in the Young (TEDDY) Parent Study | 8,743 | 8,743 | 8,747 | collection_date | R3 |
| PRJNA1195215 | Human gut metagenome | 8,550 | 1,710 | 1,710 | collection_date, latitude, location_locality, location_region, longitude | R1 |
| PRJEB75463 | PREDICT 3 US22A | 8,468 | 8,468 | 8,469 | collection_date | R1 |
| PRJNA693850 | Inference of association with the gut microbiota in stool, swab and mucosal tissue samples | 8,382 | 1,397 | 1,397 | collection_date, latitude, location_locality, location_region, location_site, longitude | R1, R3 |
| PRJNA943687 | Faecal metagenome of children with autism spectrum disorder and children that are neurotypical | 8,356 | 2,089 | 2,089 | collection_date, latitude, location_region, longitude | R1, R3 |
| PRJNA1157371 | AWI-Gen 2 Microbiome Project | 7,980 | 1,820 | 1,820 | collection_date, latitude, location_locality, location_region, location_site, longitude | R1 |
| PRJEB97686 | BMT CTN 1801 microbiome data | 7,893 | 2,631 | 2,631 | collection_date, latitude, longitude | R1 |
| PRJNA999635 | Gut Microbiome of isolated villages in rural Honduras | 7,556 | 1,889 | 1,889 | collection_date, lifestyle, lifestyle_detail, location_locality | R1, R4 |
| PRJEB102033 | Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance | 7,508 | 1,877 | 1,877 | collection_date, location_locality, location_region, location_site | R1 |
| PRJEB47383 | Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance | 7,464 | 1,866 | 1,869 | collection_date, latitude, location_region, longitude | R1 |
| PRJNA1357304 | Shotgun metagenomic sequencing of stool microbiomes relating to "Characterising the gut phageome and | 7,416 | 2,472 | 2,472 | collection_date, latitude, longitude | R1 |
| PRJEB100670 | The gut microbiota in pre-diabetes and type-2 diabetes | 7,300 | 1,825 | 1,826 | collection_date, latitude, location_region, longitude | R1 |
| PRJNA699281 | The microbiome of aging: instability, heterogeneity, and pathogenicity reservoirs in the skin, oral, | 6,276 | 1,569 | 1,569 | collection_date, latitude, location_region, longitude | R1 |
| PRJEB98467 | Whole shotgun metagenomic sequencing for 1,679 individuals (2,075 samples) from the TwinsUK cohort. | 6,210 | 2,070 | 2,071 | collection_date, latitude, longitude | R1 |
| PRJNA890666 | The gut metagenome during hematopoietic cell transplantation in children | 6,054 | 1,009 | 1,009 | collection_date, latitude, location_locality, location_region, location_site, longitude | R1, R4 |
| PRJNA1391538 | Pre-HCT Resistome Disruption Predicts ESBL Gene Expansion in Pediatric Transplant Recipients: A Pros | 6,004 | 1,242 | 1,242 | collection_date, latitude, location_locality, location_region, longitude | R1 |
| PRJNA698223 | TD Cusco travelers study | 5,958 | 993 | 993 | collection_date, latitude, location_locality, location_region, location_site, longitude | R1, R3 |