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What changed in R2026.20 (package 1.18.0, 2026-10-09)

21,453
sample × field values added (12,899 samples, 122 studies)
53
catalog studies added
0
registry studies added

Values added, by field

fieldvaluessamplesstudies
country12,19912,199111
sex2,2292,22919
age_at_collection_days1,7381,73815
health_condition_detail1,3511,35141
health_condition1,1461,14628
location_region74274213
location_site62862810
location_locality6096099
collection_date49349317
antibiotic_exposure3143148
bmi111
lifestyle111
lifestyle_detail111
subject_id111

By route: R1 16,048 · R3 3,491 · R4 1,839 · R2 75

Studies with the most added values

studytitlevaluessamples touchedsamples in studyfieldsroutes
PRJEB62678BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy2,636926926age_at_collection_days, country, sexR1
PRJNA1249435Neurobiological and neurocognitive consequences of diverse microbiome functional trajectories2,3827941,109age_at_collection_days, country, sexR1
PRJEB63587A microbiota-directed therapeutic food for severely malnourished children evaluated following acute 1,5191,5191,519countryR1
PRJNA1128723Human gut metagenomes of South African infants1,456364429country, location_locality, location_region, location_siteR1, R3
PRJNA588514viral metagenome Metagenome930930930countryR1
PRJNA912122Lactulose-mediated Bifidobacteria expansion promotes a beneficial fecal metabolite profile that is a850850850countryR1
PRJNA1219367MEtagenomic Modelling of cOgnitive ImpaiRment716358358health_condition, health_condition_detailR4
PRJEB32631Early_life_microbiota_colonisation7087082,387countryR1
PRJNA1277853PediCAP metagenomics and metaserotyping682682682countryR1
PRJNA1067625Gut microbiome of children in Haiti606121137age_at_collection_days, collection_date, country, location_locality, location_region, sexR1, R3
PRJNA749138Homo sapiens Raw sequence reads484121121antibiotic_exposure, country, health_condition, health_condition_detailR3, R4
PRJEB86785The Antibiotic Resistance in the Microbiome – Oxford452452452countryR1
PRJEB86881Deep shotgun metagenomics of the gut microbiome in Malawian adults450450450countryR1
PRJDB41979Bifidobacterium animalis subsp. lactis V9 Improves Quality of Life in Advanced Gastrointestinal Canc34887183collection_date, country, health_condition, health_condition_detailR3
PRJEB89898Metagenomic sequences of the fecal microbiome from patients with decompensated cirrhosis and ACLF33684302country, health_condition, health_condition_detail, sexR1
PRJNA943380Host DNA depletion from human intestinal samples3127878antibiotic_exposure, country, health_condition, health_condition_detailR3
PRJEB123118Infant and Mother faecal viromes from the PEARL cohort27560137age_at_collection_days, country, location_region, location_site, sexR1, R4
PRJNA1148144Biosignatures of late-onset extraintestinal bacterial infections27090114collection_date, country, sexR1, R3
PRJDB40001Human gut metagenome from the elderly population in Ginowan City, Okinawa24381148country, location_locality, location_regionR1, R4
PRJEB74035Long-term fasting remodels gut microbial metabolism and host metabolism241241241countryR1
PRJNA1125836Gut microbiome obesity index, a new analytical part of the metagenomics workflow to evaluate gut dys2359191age_at_collection_days, country, sexR1
PRJNA588627human gut metagenome Metagenome2304646antibiotic_exposure, country, health_condition, health_condition_detail, location_regionR1, R3
PRJNA648796human gut metagenomics Metagenome229229229countryR1
PRJNA648797human gut metagenomics VLP reads229229229countryR1
PRJEB58879BLOOD226226226countryR1

Catalog studies added

studytitlesamples
PRJEB63587A microbiota-directed therapeutic food for severely malnourished children evaluated following acute 1,519
PRJEB38742Imidazole propionate is increased in diabetes and associated with dietary patterns and altered micro1,018
PRJNA588514viral metagenome Metagenome930
PRJEB62678BASIC: Biology, Affect, Stress, Imaging and Cognition in pregnancy926
PRJNA912122Lactulose-mediated Bifidobacteria expansion promotes a beneficial fecal metabolite profile that is a850
PRJNA1277853PediCAP metagenomics and metaserotyping682
PRJEB86785The Antibiotic Resistance in the Microbiome – Oxford452
PRJEB86881Deep shotgun metagenomics of the gut microbiome in Malawian adults450
PRJNA715245human gut metagenome Metagenome281
PRJEB74035Long-term fasting remodels gut microbial metabolism and host metabolism241
PRJEB60692The impact of exercise-induced muscle damage, inflammation and oxidative stress on the intestinal mi232
PRJNA648796human gut metagenomics Metagenome229
PRJNA648797human gut metagenomics VLP reads229
PRJEB58879BLOOD226
PRJEB66487A microbiota-directed complementary food intervention improves stunting in undernourished Bangladesh225
PRJEB44907Effectiveness and safety of Bifidobacterium and berberine in human hyperglycemia and their regulator208
PRJNA1372070Hepatocellular Carcinoma Cohort Metagenomics197
PRJEB75353Effects of a five-day hypocaloric and ketogenic diet on risk factors for cardiometabolic disease185
PRJNA504921viral metagenome Metagenome167
PRJEB50505Effect of a dairy-based product on sleep quality, stress, and gut-microbiota analyzed using shotgun 134
PRJNA1192252The Systemic Impact of Helicobacter pylori Infection on the Microbiome of Whole Digestive Tract Base132
PRJEB76399Effect of large-scale population-based dietary change to vegetarianism on antimicrobial resistance a121
PRJNA256106Human gut Targeted Locus (Loci)109
PRJNA944553Metagenomic samples of cat and human feces Metagenome95
PRJNA1125836Gut microbiome obesity index, a new analytical part of the metagenomics workflow to evaluate gut dys91

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Release notes · all changes