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All colorectal cancer and adenoma samples

Disease reference sets · collection id colorectal-cancer-samples

Every gut sample in the catalog whose evidence assigns colorectal cancer or colorectal adenoma/polyp as the health condition, whatever the study — for extending the CRC benchmark beyond the 2019 meta-analysis cohorts.

Open in the sample explorer (6,334 samples)

85
studies with member samples
6,334
member samples in this release

Membership rule

health_conditioncolorectal_cancer | colorectal_adenoma
body_site_classprimary

Composition

Age category
adult2,724
unknown2,492
elderly1,113
infant4
adolescent1
Country
CN1,652
US1,229
JP973
NL774
IT251
ES244
Health condition
colorectal_cancer Colorectal cancer4,799
colorectal_adenoma Colorectal adenoma / polyp1,535
Lifestyle
urban_industrialized Urban / industrialized (only when stated by the source)40
rural_non_industrialized Rural28

Member studies (85)

StudyTitleMember samplesFirst public
PRJNA941834AC-ICAM: An Atlas and Compass of Immune-CAncer-Microbiome Interactions in Colon Cancer - 16S and WGS metagenomics5342023
PRJDB37508Human Gut Metagenome4702025
PRJNA1237248MicroN Study Prescient data4492025
PRJDB4176metagenomic data from human fecal samples3302019
PRJNA1169175Expansion of a bacterial operon during cancer treatment ameliorates drug toxicity2552024
PRJEB72524Gut microbiome samples from a cohort of CRC patients in Brno, Czech Republic.2032025
PRJEB72523Gut microbiome samples from the AtezoTRIBE phase-II clinical trial1632025
PRJNA1195392Metagenomic sequencing of microbial DNA extracted from stool samples of CRC, CRA and Control Raw sequence reads1602026
PRJNA1171107The gut microbiota is associated with capecitabine toxicity in colorectal cancer patients1592025
PRJNA888860Comprehensive multi-omics analysis of microbiome, metabolome, and host genome in right- and left-sided colon cancer1422024
PRJNA699934Structure of the Mucosal and Stool Microbiome in Lynch Syndrome1312024
PRJNA758208A discovery cohort of 49 normal controls and 48 advanced adenoma patients, and a training cohort of 50 normal controls, 46 advanced adenoma patients and 30 colorectal cancer patients1242021
PRJNA1198725Human gut metagenome1232025
PRJNA1475036Comparison of the Effects of Stent-based Diversion Technique versus Prophylactic Double-lumen Ileostomy on Intestinal Flora in Postoperative Patients with Rectal Cancer1202026
PRJNA987980Microbiome Pipeline Benchmarking1152024
PRJNA1157403Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change1122025
PRJDB10829Generic sample from human gut metagenome1122022
PRJNA763023Dysbiosis of human gut microbiome in young-onset colorectal cancer1002021
PRJNA429097Microbiota Research on Chinses Colorectal Cancer992019
PRJEB34333The metagenomic analysis of formalin-fixed paraffin-embedded tumour and distal tissue from colorectal cancer patients reveals differences in the microbiome972021
PRJEB7774Gut microbiome development along the colorectal adenoma-carcinoma sequence932015
PRJNA447983Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts882018
PRJEB44214Changes in the gut microbiome in colon cancer surgery patients: a pilot observational study882022
PRJNA731589Metagenomic sequencing of microbial DNA extracted from stool samples of CRC and HS842022
PRJNA745329Fecal and colon mucosa sequencing of tubular adenoma, serrated, and polyp-free individuals822021
PRJEB123938Beyond Taxonomy: Fungal Nutraceutical Supplementation Alters the Functional Potential of the Gut Microbiome in Colorectal Cancer812026
PRJNA706060human gut metagenome Metagenome792021
PRJEB72525Gut microbiome samples from a cohort of CRC patients in two hospitals in Prague and Plzen, Czech Republic.782025
PRJNA1079906Fecal microbiome sequencing of colorectal cancer782024
PRJEB10878Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer742015
PRJNA1235197Microbiome signatures linked to cancer and treatment adverse events in a real-world cohort682025
PRJEB91542Microbial metabolic pathways guide response to immune checkpoint blockade therapy682025
PRJNA484031Faeces Genome sequencing622019
PRJNA961076Identification of taxonomic changes in feces bacteriome associated with colorectal polyps and cancer: potential biomarkers for early diagnosis602023
PRJNA1468465Metagenomic profiling of patients with unresectable colorectal cancer liver metastases treated with neoadjuvant atezolizumab and ABFOLFOX592026
PRJEB60097Microbiome in health and disease592023
PRJNA1245618The characteristics of tissue microbiota in different anatomical locations and different tissue types of the colorectum in patients with colorectal cancer572025
PRJNA389927Viral and Bacterial Communities of Colorectal Cancer562017
PRJEB55366A collection of whole genome sequencing (WGS) datasets from patients with colorectal cancer. Patients were treated with chemotherapy and target therapies (anti-VEGF or anti-EGFR) and showed different responses. Samples come from stool.542022
PRJEB79034Gut microbiome and intestinal miRNA composition of patients with colorectal adenomas542025
PRJEB12449Reproducibility of associations between the human gut microbiome and colorectal cancer assessed in a patient population from Washington, DC, USA522016
PRJNA768298Metagenomic analysis towards biomarkers and prediction models between intestinal polyp patients and colorectal cancer patients522021
PRJNA692325gut metagenome in CRC patients with illumina sequencing472022
PRJNA1054290metagenomic shotgun sequencing of baseline colorectal cancer patient442025
PRJEB6070Potential of fecal microbiota for early stage detection of colorectal cancer422014
PRJNA1210680Mucosal Virome and Transcriptomes in Colorectal neoplasia402025
PRJNA1254622Patients with pelvic irradiation392026
PRJNA1028158Metagenomics-Seq of human intestinal mucosa382023
PRJNA479838human stool Raw sequence reads352018
PRJDB17048Japanese Lynch Syndrome Gut Microbiome332024
PRJEB81237Metabolites derived from the gut microbiota alleviate colorectal cancer322026
PRJNA1049662metagenomic shotgun sequencing of baseline colorectal cancer patient322025
PRJNA1167935Stool shotgun metagenomic profiles CRC patients and healthy controls - TU cohort322024
PRJNA825696Gut microbiota profile in ileostomy samples from CRC Patients312022
PRJNA531273Association of Flavonifractor plautii, a flavonoid degrading bacterium, with the gut microbiome of colorectal cancer patients in India302019
PRJNA909793Lifestyle and Outcomes after Gastrointestinal Cancer (LOGIC) - microbiome study282022
PRJDB20343Shotgun metagenome sequencing of oral and stool samples from colorectal cancer patients before and after administration of antibiotic prophylaxis for surgery282025
PRJNA1138893The aim of this study was to analyze the differences in gut microbiota, metabolites, and metabolic pathways between healthy individuals and patients with colorectal cancer262024
PRJEB27928Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.222018
PRJNA936589Characterization of the gut microbiota in patients with stage III colorectal cancer: a case-control study222023
PRJNA524170Resistant microbiome underlies antibiotic therapy in pouchitis212019
PRJNA754518microbiome and resistome in CRC202023
PRJEB70916Whole Metagenome Sequencing of colo-rectal cancer in Lynch Syndrome Patients192024
PRJEB38258The long-term impact of distal feeding on patients with stoma172025
PRJNA996050Fecal metagenomic profiling of vermiform appendix from adult patients with pancreatic or colon cancer132023
PRJNA222611Microbiome analysis of stool samples from African Americans with colon polyps122013
PRJNA494824Gut metagenomic raw sequence reads of cancer patients122019
PRJNA397219Gut metagenomes of patients with colorectal cancer112017
PRJNA725613colorectal gut microbiota102021
PRJNA1050885gut microbiome of CRC patients and healthy individuals102024
PRJNA314481Bacteria and human colon samples from human gut Metagenome102016
PRJNA663646External validation cohorts for CRC-SNP analysis82020
PRJNA1065951Fecal microbiota transplantation promotes immunotherapy sensitivity in refractory gastrointestinal cancer patients72024
PRJEB33098Colonbiome pilot: 9 stools, sequenced by shotgun62019
PRJEB64515Gut Microbiome Dynamics and Predictive Value in Hospitalized COVID-19 Patients: A Comparative Analysis of Shallow and Deep Shotgun Sequencing62023
PRJNA1372073Hepatocellular Carcinoma Cohort Metagenomics52026
PRJNA637365Dysbiosis in metabolic genes of the gut microbiomes of patients with a Pouch42021
PRJEB44121Human enteric viruses shape disease phenotype through divergent innate immunomodulation42021
PRJNA1430386Impact of bladder microbiome on BCG response32026
PRJNA1333319Phage bacteria interaction networks differentiate ulcerative colitis and colorectal cancer from the healthy gut32026
PRJNA1475489Brain Health and the Gut Microbiome (bMicrobiome Study)22026
PRJNA312222Genome reconstructions from human gut metagenomes22016
PRJNA318564human gut metagenome Metagenome22017
PRJNA880658metagenome analysis of human gut microbiota12025
PRJEB91718COVID-19 Microbiome - deep samples12025