What changed in R2026.13 (package 1.13.0, 2026-09-30)
34,336
sample × field values added (21,309 samples, 131 studies)
39
catalog studies added
9,959
registry studies added
Values added, by field
| field | values | samples | studies |
|---|---|---|---|
| smoking_status | 4,788 | 4,788 | 19 |
| diet | 4,095 | 4,095 | 40 |
| diet_detail | 4,095 | 4,095 | 40 |
| medication | 3,769 | 3,769 | 41 |
| stool_consistency_bristol | 3,037 | 3,037 | 11 |
| location_locality | 2,810 | 2,810 | 7 |
| health_condition | 2,599 | 2,599 | 6 |
| health_condition_detail | 2,286 | 2,286 | 5 |
| medication_detail | 1,789 | 1,789 | 25 |
| location_site | 1,657 | 1,657 | 21 |
| antibiotic_exposure | 1,351 | 1,351 | 11 |
| collection_date | 1,050 | 1,050 | 7 |
| country | 460 | 460 | 2 |
| location_region | 428 | 428 | 6 |
| sex | 122 | 122 | 2 |
By route: R1 21,573 · R3 12,248 · R4 454 · R2 61
Studies with the most added values
| study | title | values | samples touched | samples in study | fields | routes |
|---|---|---|---|---|---|---|
| PRJNA693850 | Inference of association with the gut microbiota in stool, swab and mucosal tissue samples | 2,794 | 1,397 | 1,397 | health_condition, health_condition_detail | R3 |
| PRJEB110772 | Gut microbiota associates with frailty in older women | 2,398 | 2,398 | 2,398 | location_locality | R3 |
| PRJNA834801 | Characterizing dysbiosis of the Parkinson's disease gut microbiome using shotgun metagenomics | 1,828 | 720 | 725 | medication, smoking_status, stool_consistency_bristol | R1 |
| PRJEB37731 | Effects of the menstrual cycle and hormonal contraceptives on the human microbiome | 1,388 | 1,325 | 2,825 | medication, medication_detail, smoking_status | R1 |
| PRJNA1235197 | Microbiome signatures linked to cancer and treatment adverse events in a real-world cohort | 1,361 | 1,329 | 1,651 | medication, stool_consistency_bristol | R1 |
| PRJNA642308 | Gut microbiome of subjects with inflammatory bowel disease undergoing diet intervention | 1,227 | 409 | 409 | antibiotic_exposure, collection_date, country | R3 |
| PRJEB32762 | iMSMS Baranzini data | 988 | 494 | 3,765 | medication, medication_detail | R1 |
| PRJNA1086951 | MIND Study - Fecal Metagenomics | 937 | 313 | 638 | diet, diet_detail, health_condition | R1, R3 |
| PRJNA1305379 | Fecal immunochemical tests from population-based colorectal cancer screening programs support prospe | 903 | 903 | 1,164 | smoking_status | R1 |
| PRJNA675301 | Role of Diet in the Reconstitution of the Human Gut Microbiome and its Metabolome | 868 | 434 | 474 | diet, diet_detail | R1 |
| PRJNA804384 | Inflammatory bowel disease patients undergoing biological therapy | 864 | 432 | 432 | medication, medication_detail | R1 |
| PRJEB56830 | Isocaloric dietary protein intervention | 850 | 425 | 430 | diet, diet_detail | R1 |
| PRJNA945408 | Impact of antibiotic regimens for the prevention and treatment of travelers diarrhea Prevent TD and | 832 | 416 | 416 | health_condition, health_condition_detail | R3 |
| PRJEB64515 | Gut Microbiome Dynamics and Predictive Value in Hospitalized COVID-19 Patients: A Comparative Analys | 732 | 422 | 946 | medication, smoking_status | R1 |
| PRJNA861716 | gut microbiome in polluted settlements | 718 | 359 | 359 | health_condition, health_condition_detail | R3 |
| PRJEB50408 | Resistant starch gut microbiome | 628 | 198 | 222 | diet, diet_detail, medication, smoking_status, stool_consistency_bristol | R1 |
| PRJNA854889 | A Randomized Trial Comparing the Specific Carbohydrate Diet to a Mediterranean Diet in Adults With C | 626 | 313 | 339 | diet, diet_detail | R1 |
| PRJNA1124620 | Longitudinal study of human gut microbiota (untreated and ethanol treated paired stool samples) | 613 | 201 | 201 | diet, diet_detail, medication, medication_detail, stool_consistency_bristol | R1 |
| PRJNA491335 | 3G low-gluten cross-over trial - faeces metagenome data | 416 | 208 | 208 | diet, diet_detail | R1 |
| PRJEB76664 | Metagenomic analysis of the gut microbiome of healthy participants in the GALAXY project | 393 | 131 | 131 | collection_date, location_locality, location_site | R4 |
| PRJNA895487 | Multi-omic gut microbiomes of autistic children and their typically developing siblings | 388 | 194 | 194 | diet, diet_detail | R1 |
| PRJEB105465 | Effects of antibiotic treatment on normal intestinal flora (ARG-study) | 360 | 180 | 548 | diet, diet_detail | R1 |
| PRJNA1402699 | Dietary resistant starches type 2 and 4 differentially impact the human gut microbiome | 341 | 341 | 341 | collection_date | R3 |
| PRJNA1212336 | The effects of pulses proteins on the gut metagenome | 338 | 169 | 253 | diet, diet_detail | R1 |
| PRJNA770295 | Dietary fiber and probiotics impact the gut microbiome and melanoma immunotherapy response | 322 | 164 | 167 | medication, medication_detail | R1 |
Catalog studies added
| study | title | samples |
|---|---|---|
| PRJNA1242044 | Profound taxonomic and functional gut microbiota alterations associated with trichuriasis: cross-cou | 790 |
| SRP057027 | Inflammation, Antibiotics, and Diet as Concurrent Environmental Stressors of the Gut Microbiome in P | 369 |
| PRJNA1221567 | Viral Microbiome Dataset of Children Post-Allogeneic Hematopoietic Cell Transplantation | 343 |
| PRJNA1045701 | Sample size estimations based on human microbiome temporal stability over six months: a shallow shot | 212 |
| PRJNA1306109 | Home versus Hospital Transplant | 202 |
| PRJDB43571 | Changes in the gut microbiota of the drinking population after Fucha tea intervention (PRJCA034544) | 176 |
| PRJNA1454700 | human fecal metagenome | 142 |
| PRJNA1295133 | Gut Microbiome and Virome Dysbiosis in Pediatric Idiopathic Nephrotic Syndrome: A Multi-Kingdom Disr | 123 |
| PRJNA1295840 | Gut Microbiome and Virome Dysbiosis in Pediatric Idiopathic Nephrotic Syndrome: A Multi-Kingdom Disr | 122 |
| PRJNA1394613 | Intestinal flora structure mediated regulatory T cells in the effect and mechanism of postmenopausal | 118 |
| PRJDB14272 | Metagenomic analysis of fecal samples obtained from ulcerative colitis patient in Japan | 114 |
| PRJNA715947 | Gut microbiota and tuberculosis | 99 |
| PRJEB81819 | microbiota in cirrhosis | 95 |
| PRJEB87798 | Short- and long-term development of gut microbiota in children after liver transplantation | 90 |
| PRJNA1251023 | DFI C. diff Metagenomics Profiling | 73 |
| PRJNA1144402 | Patients Infected with the Hepatitis D Virus have a Unique Gut Microbiome with Distinguishing Microb | 67 |
| PRJEB120968 | Gut microbiome profiles associated with simple liver steatosis in MASLD: Swedish cohort. | 66 |
| PRJNA1358001 | human gut Metagenome | 61 |
| PRJNA1457283 | Homo sapiens Genome sequencing and assembly | 51 |
| PRJNA1391873 | Correlation between gut microbiota and their metabolites and the efficacy of chemotherapy combined w | 47 |
| PRJNA594824 | Bacteriophages regulate gut bacterial communities isolated from stunted children in an age specific | 40 |
| PRJEB120969 | Gut microbiome profiles associated with simple liver steatosis in MASLD: Austrian cohort. | 36 |
| PRJEB120967 | Gut microbiome profiles associated with simple liver steatosis in MASLD: Italian cohort. | 32 |
| PRJNA1333319 | Phage bacteria interaction networks differentiate ulcerative colitis and colorectal cancer from the | 27 |
| PRJNA1368707 | Meta Analysis of Paired Short-read 16S V4, Full-length 16S, and Shotgun Metagenomic Profiling | 18 |
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