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Curated healthy adult gut samples (all studies)

Benchmark and reference cohorts · collection id healthy-adult-reference

Every gut sample in the curated catalog whose source states the subject is healthy or a control and whose age at collection falls in the adult band (18–65 y). The catalog's own counterpart of the curatedMetagenomicData healthy-adult set; membership is evidence-backed per sample.

Open in the sample explorer (57,647 samples)

540
studies with member samples
57,647
member samples in this release

Membership rule

health_conditionhealthy_control
age_categoryadult
body_site_classprimary

Not the cMD study list: the set is defined by the catalog's per-sample health_condition and age_category determinations, so it grows with every release.

Composition

Age category
adult57,647
Country
US14,997
CN6,455
DE2,417
GB2,412
DK2,108
NL2,072
Health condition
healthy_control Healthy / control57,647
Lifestyle
indigenous_community Indigenous community (subsistence not specified)350
rural_non_industrialized Rural211
athlete Athletes / elite sport171
urban_industrialized Urban / industrialized (only when stated by the source)165
extreme_environment Extreme-environment residents / expeditions (high altitude68
traditional_agriculturalist Traditional / subsistence agriculturalist56

Member studies (540)

StudyTitleMember samplesFirst public
PRJEB23147Human_colon_16S5,2492018
PRJEB46788Codiversification of gut microbiota with humans1,7042022
PRJEB28097(1) Personalized microbiome and host features resist gut mucosal colonization by empiric probiotics (2) Post-antibiotic gut mucosal microbiome reconstitution is impaired by probiotics and improved by autologous FMT1,5832018
PRJNA354235Human gut metagenome and metatranscriptome raw sequence reads.1,3072017
PRJEB39223Microbiome connections with host metabolism and habitual diet from the PREDICT 1 metagenomic study1,0762020
PRJNA974858Temporal shotgun sequencing of the gut microbiota of healthy adults taking ciprofloxacin1,0402024
PRJEB32762iMSMS Baranzini data1,0242019
PRJNA594610Human gut microbiome response to PDX intake9722020
PRJNA594393Human gut microbiome response to FOS intake9472020
PRJNA588514viral metagenome Metagenome9302021
PRJEB11532Towards personalized nutrition by prediction of glycemic responses8702015
PRJEB85985Microbial-Human Ecology and Temperature7682025
PRJNA688274Netherland Travelers5682021
PRJNA544527BIO-ML: The Broad Institute-OpenBiome Microbiome Library enables mechanistic studies with isolates, genomes, and longitudinal metagenomics and metabolomic data5632019
PRJNA594620Human gut microbiome response to PDX intake followed by FOS intake5612020
PRJEB105465Effects of antibiotic treatment on normal intestinal flora (ARG-study)5482026
PRJNA942468Gut microbiome data from 500 Functional Genomics (500FG) project5172023
PRJNA1011937Metagenomics of Chinese peri/post-menopausal women4992023
PRJNA1077691unidentified Raw sequence reads4982024
PRJNA1146994Personal traits, lifestyle decisions, and geography shape our dietary intake and consequently our bacterial and fungal gut microbiome Raw sequence reads4972026
PRJEB50761Integration of the human gut microbiome and serum metabolome reveals novel biological factors involved in the regulation of bone mineral density4962022
PRJNA594613Human gut microbiome response to FOS intake followed by PDX intake4912020
PRJNA448876Dense longitudinal metagenomic analysis of the gut microbiome of FMT donors4692020
PRJNA1258884Impact of Yogurt and Rolled Oats on the Gut Microbiome: A Randomized Crossover Study displaying Individual Responses and General Resilience4402025
PRJEB37731Effects of the menstrual cycle and hormonal contraceptives on the human microbiome4162020
PRJNA662107human metagenome Raw sequence reads4062021
PRJNA1450325Metagenomes of fermented foods and gut microbiome from non Western populations3902026
PRJNA388263Colon cleanout human gut V4 16S survey & shotgun metagenomic sequencing3862017
PRJNA657309PROMISE Cohort Metagenome sequence data3832021
PRJEB56264Psychobiotic Diet Study3802022
PRJNA814303Impact of complex oligosaccharides and a probiotic on the human microbiome3772022
PRJEB108118Resistant dextrin promotes beneficial fecal bacteria in high and low fiber diet populations: a randomized, double-blinded, controlled pilot study3592026
PRJNA861716gut microbiome in polluted settlements3592023
PRJNA1402699Dietary resistant starches type 2 and 4 differentially impact the human gut microbiome3412026
PRJNA686265Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations3192021
PRJNA685797The Influence of the gut microbiome on BCG-induced trained immunity3182021
PRJEB101630Patterns of gut microbiome composition, function and dynamics in young children, adolescents and adults over a three-year period3152026
PRJNA795985Shotgun metagenome sequencing of fecal samples from healthy US adults2902022
PRJNA664754Fecal metagenomes of healthy volunteers2892022
PRJEB4336Richness of human gut microbiome correlates with metabolic markers2882013
PRJNA398089Longitudinal Multi’omics of the Human Microbiome in Inflammatory Bowel Disease2872017
PRJNA1425466Stool metagenome in primary billiary cholangitis (PBC)2782026
PRJEB58157Perturbation and resilience of the gut microbiome three months after β-lactams exposure in healthy volunteers suggest an important role of endogenous β-lactamases2772023
PRJNA1463324VE202 phase 1 stool metagenomes2732026
PRJEB108545Coffee Shapes the Gut Microbiome and Host Cognition2692026
PRJNA1390888Immune-microbiome coordination defines interferon setpoints in healthy humans [CITE-seq and WMS]2672026
PRJNA1235197Microbiome signatures linked to cancer and treatment adverse events in a real-world cohort2632025
PRJNA993161Impact of complex oligosaccharides and a probiotic on the antibiotic-treated human microbiome2622023
PRJEB78698Impact of low-dose GOS on Bifidobacterium abundance in healthy women.2582024
PRJNA822660Profiling the human intestinal environment under physiologic conditions2542023
PRJNA1212336The effects of pulses proteins on the gut metagenome2532025
PRJNA797994Gut Microbiome of Helminth Infected Indigenous Malaysians Is Context Dependent2522022
PRJDB3601Metagenomics of Japanese gut microbiomes2522016
PRJEB60773Long-term interplays between COVID-19 vaccines and the gut microbiome2482023
PRJNA1425460Stool metagenome in primary sclerosing cholangitis (PSC)2452026
PRJNA1240928Spatiotemporal Profiling of The Human Small Intestine Metabolome and Microbiome2422026
PRJNA983517Gut microbiota is associated with longer-term vaccine immunogenicity of BNT162b22422023
PRJEB46398The gut microbiomes of recreational athletes reflect differences in fitness levels and training load2402023
PRJNA847068Ibezapolstat Microbiome Studies2402022
PRJNA801051Gut microbiota community in healthy Chinese population2392022
PRJEB1220A method for identifying metagenomic species and variable genetic elements by exhaustive co-abundance binning2342014
PRJNA1366038Interaction between Spicy Food and Alcohol Consumption in Shaping Gut Microbiome and Music Metabolism: A Cross-Sectional Study in Healthy Adults2292026
PRJEB30834Human fecal metagenomes of individuals sampled along a small-scale urbanization gradient in Cameroon2282021
PRJNA1132291Human and Bacterial Molecular Pathways in Cancer Risk: Modulation by diet2112025
PRJEB9584KCL_twins22112017
PRJNA1124620Longitudinal study of human gut microbiota (untreated and ethanol treated paired stool samples)2012026
PRJNA4913353G low-gluten cross-over trial - faeces metagenome data2002018
PRJNA1430192Shotgun metagenomic sequencing of human fecal samples from adults aged 50 years and older participating in a randomized placebo-controlled trial of KM2-HPB011982026
PRJEB81519Effects of a Fiber Mixture on Gut Microbiome Diversity and Short-Chain Fatty Acids in Adults with Increased Metabolic Risk: A Randomized Cross-over Study1972025
PRJNA1237248MicroN Study Prescient data1962025
PRJNA698223TD Cusco travelers study1912022
PRJEB75353Effects of a five-day hypocaloric and ketogenic diet on risk factors for cardiometabolic disease1852024
PRJNA834885Gut metagenomes of healthy Chinese international travellers1802023
PRJNA1115893Effect of Green Banana and Pineapple Fibre Powder Consumption on Host Gut Microbiome1782024
PRJEB52380S3WP1772024
PRJNA422434A metagenome-wide association study of gut microbiota in type 2 diabetes.1752012
PRJNA1082632Indian Microbiome Project1732024
PRJEB45799The person-to-person transmission landscape of the gut and oral microbiomes1712022
PRJNA1083321Human faeces Raw sequence reads1652025
PRJEB113836Resistome and microbiome-immune interactions in an Eastern European population with high antibiotic use1582026
PRJNA1125469Longitudinal Gut Metagenomics profiling of ME/CFS1562025
PRJEB11419American Gut Project1552015
PRJNA993675Discovery of disease-adapted bacterial lineages in inflammatory bowel diseases1542024
PRJNA606198Comparison of methods to collect fecal samples for microbiome studies using whole-genome shotgun metagenomic sequencing1482020
PRJNA48479Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase1452010
PRJNA1285875Microbiota and Resistome Comparison of Swiss Expatriates living Abroad1442025
PRJEB58864The microbiome of patients with social anxiety disorder is altered in comparison to healthy controls1442023
PRJNA872328GutBack1432022
PRJNA9257002-months Longitunidal healthy human gut microbiome1432023
PRJNA905467Dynamic nature of viral and bacterial communities in human faeces during ex vivo incubation1422023
PRJEB91718COVID-19 Microbiome - deep samples1412025
PRJEB52881Multi-omic Analyses Reveal Bifidogenic Effect and Metabolomic Shifts in Healthy Human Cohort Supplemented with a Prebiotic Dietary Fiber Blend1402022
PRJNA862629Segamat Resistome Profiling1402023
PRJEB6337Liver cirrhosis occurs as a consequence of many chronic liver diseases that are prevalent worldwide. Previous studies have shown an association between the gut microbiota and liver complications such as cirrhosis and other liver injuries. We therefore undertook a whole gut microbiome wide association study of stool samples from 98 liver cirrhosis patients and 83 healthy controls to characterise the faecal microbial communities and their functional composition. In total, we generated 860 Gb of high-quality sequence data and built a reference gene set for the liver cirrhosis cohort containing 2.69 million genes, 36.1% of which was not covered by previously published gene catalogues.1402014
PRJNA381333Tibetan Gut Miicrobiota Metagenome1402018
PRJNA1309965Lactiplantibacillus plantarum from healthy adult feces functions as a natural defense against microplastic toxicity1382025
PRJNA1356643Profiling the gut microbiota with Saudi healthy aging1382025
PRJDB4176metagenomic data from human fecal samples1362019
PRJEB21528Here we performed a metagenome-wide association study (MWAS) on stools from 218 individuals with atherosclerotic cardiovascular disease (ACVD) and 187 healthy controls.1362017
PRJEB50408Resistant starch gut microbiome1352022
PRJNA1157410Microbial diversity in human gut affected by grape polyphenols1342025
PRJNA615162Gut Microbiome characterization of IgG4 patients and Systemic Sclerosis patients1332021
PRJNA217052Fiji COMP1322015
PRJEB72300Ketogenic diet (but not sugar restriction) alters glucose tolerance, lipid metabolism, peripheral tissue phenotype and the gut microbiome: an RCT.1312024
PRJNA1177009A human milk oligosaccharide alters the microbiome, circulating hormones, cytokines and metabolites in a randomized controlled trial of older individuals1312024
PRJEB81698Metagenomic analysis of the gut microbiome of individuals born at low birth weight1302024
PRJNA545408Longitudinal study of the human gut virome1302019
PRJNA1364832Gut microbiome profiles following vancomycin pretreatment in an experimental human C. difficile colonisation model1292026
PRJEB105455PERSIMMON POWDER FROM FRUIT LOSS AS NOVEL PREBIOTICS TO MODULATE GUT MICROBIOTA1282026
PRJNA987980Microbiome Pipeline Benchmarking1262024
PRJEB22515Identifying_gut_microbial_metabolites_and_the_bacteria_responsible_for_their_formation1262018
PRJEB70237HELMi infant and parental stool WGS metagenomes1222024
PRJEB9576Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome1192016
PRJNA1000186Microbiome restoration using a non-industrialized-type diet and a lost microbe1182025
PRJNA828396Virome enriched metagenomics of healthy controls and patients with IBD1182022
PRJNA743361High fermented food, high fiber diet effect on human microbiome and immune system1152021
PRJNA375935human gut Metagenome1142017
PRJNA485056Metagenomic sequencing of stool samples from rural communities from north-eastern Madagascar1102018
PRJEB70508Gut microbiome composition and dynamics in hospitalized COVID-19 patients and patients with the post-acute COVID-19 syndrome1102024
PRJEB36820Investigating the health status and microbiota in members of the Irish Travelling community1092020
PRJEB2054A human gut microbial gene catalog established by deep metagenomic sequencing1092010
PRJEB41787Healthy danish metagenomic samples from Danish study of Functional Disorders1072022
PRJDB18854Gut microbiota of healthy Japanese adult1072025
PRJEB35769Gut microbiome response to a fermented milk product in healthy subjects1072020
PRJNA776530Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes1052022
PRJNA300541Antibiotic resistance exchange between microbiota in resource-poor settings in Latin America1032016
PRJEB39500Baseline gut microbiome composition predicts metformin therapy short term efficacy in newly diagnosed type 2 diabetes patients1032021
PRJDB11444Gut microbiome of prediabetes in Japan1012023
PRJEB12123Gut microbial dysbiosis in young adults with obesity1012016
PRJEB55607The effect of dietary bioactive on gut microbiome diversity (DIME) – a pilot study1002023
PRJNA1116523Microbial and metabolic gut profiling across seven malignancies identifies fecal Faecalibacillus intestinalis and formic acid as commonly altered in cancer patients1002024
PRJEB42906Diet supplementation with NUTRIOSE®, a resistant dextrin, increases the abundance of Parabacteroides distasonis in the human gut1002022
PRJNA994318human gut Raw sequence reads1002023
PRJNA1463012Human Fecal Bacteria Metagenome1002026
PRJNA1293883Machine Learning Identifies Microbiome and Clinical Predictors of Sustained Weight Loss Following Prolonged Fasting982026
PRJEB25954Metagenomic insights into resistant starch degradation by human gut microbiota972018
PRJNA644666Gut Metagenomes of South Asian Canadians962021
PRJEB6997Gut and Oral Microbiome Dysbiosis in Rheumatoid Arthritis962015
PRJEB55648multi bodi site study of Bolivar amerindian microbiome962023
PRJNA1088844Characterization of the fecal microbial taxonomic composition and functional potential and integrative analysis with gastrointestinal and non-gastrointestinal symptoms in subjects with disorders of gut-brain interactions942024
PRJEB114255IBD Parisian Gut Microbiome Cohorte942026
PRJNA811803Synbiotic tolerability study932022
PRJNA1115039Dietary selective effects manifest in the human gut microbiota from species composition to strain genetic makeup922024
PRJNA397450Human gut microbial community assessment using stool, rectal swab, and mucosal samples922017
PRJNA290729Characterization of the distal gut microbiota in obese patients following a weight-loss intervention using whole metagenome shotgun sequencing922015
PRJEB79317Differences in Gut Microbiome Antibiotics Resistance Gene Between Healthcare Workers and the Healthy Population912025
PRJNA878603Multi-omics of host-microbiome interactions in short- and long-term Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)902023
PRJNA1513476Dose response effects of microencapsulated Lacticaseibacillus rhamnosus GG in a yogurt drink on gut microbiome modulation in healthy adults: a randomized, double-blind crossover trial902026
PRJNA793776Homo sapiens Raw sequence reads892022
PRJNA305507Athlete Microbiome Project (AMP)892016
PRJNA275349Human Microbiome Environment Metagenome892015
PRJNA931814Resistome and microbiome analysis of stool samples from healthy people using shotgun metagenomics.882023
PRJNA541083Quantifying spatiotemporal variability and noise in absolute microbiota abundances using replicate sampling882019
PRJNA397112Indian Human Gut Microbiome872018
PRJNA791018The effects of TWK10 on human gut microbial diversity862022
PRJNA751448gut microbiome of Myalgic Encephlomyelitis/Chronic Fatigue Syndrome patients862021
PRJNA647720Human gut microbiome sequencing during a high fiber diet intervention862021
PRJNA1195392Metagenomic sequencing of microbial DNA extracted from stool samples of CRC, CRA and Control Raw sequence reads852026
PRJNA1215598Human Gut Microbiota852025
PRJNA834801Characterizing dysbiosis of the Parkinson's disease gut microbiome using shotgun metagenomics842022
PRJNA1266865Indian tribal gut microbiomes832025
PRJNA1002850An insight into the functional alterations in the gut microbiome of healthy adults in response to a multi-strain probiotic intake: A single arm open label trial.822024
PRJEB79034Gut microbiome and intestinal miRNA composition of patients with colorectal adenomas822025
PRJNA1417478Data of Feces Analyzed by Metagenomics Bifidobacterium Supplementation Maintains Gut Microbiota Stability and Enhances Well-Being During Short-Term Travel802026
PRJEB112777Anxiety associated with dietary intake and gut microbiome features in a cross-sectional cohort of sub-clinically anxious young women.802026
PRJNA1441102Effect of AG1 supplementation on nutritional adequacy and gut microbial composition in trained adults792026
PRJNA892265Microbiome changes induced by resistant dextrin modulate intestinal gas homeostasis792023
PRJNA650244Gut metagenomes of patients with COVID-19782021
PRJNA1208576Structural and functional alteration of the gut microbiomes in ICU staff782026
PRJNA917645Shallow shotgun sequencing reduces technical variation in microbiome analysis782023
PRJNA1049470Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome762023
PRJNA421881human gut metagenome Metagenome742017
PRJNA743718Whole genome shotgun metagenome of Parkinson's disease patients and their spouse742021
PRJNA521587Gut microbiome in individuals with fibromyalgia - WGS742019
PRJNA176385Human gut microbiome of Russian population732013
PRJNA356102human gut metagenome in RA722016
PRJEB70723Comparison of experimental methodologies based bulk-metagenome and virus-like particle enrichment722024
PRJDB36826Metagenomic data of the gut microbiota in healthy young individuals (PRJCA040384)722025
PRJNA1346870Oral and gut samples in healthy workers722025
PRJEB8094The initial state of the human gut microbiome determines its reshaping by antibiotics722015
PRJNA731589Metagenomic sequencing of microbial DNA extracted from stool samples of CRC and HS712022
PRJNA824068A wipe-based stool collection and preservation kit for microbiome community profiling712022
PRJEB101120Metagenomics of atopic dermatitis712025
PRJEB7369Influence of travel on antibiotic resistance702015
PRJNA401977Metagenomic analysis of fecal microbiome from patients with gestational diabetes mellitus702017
PRJEB76994EarlyCause. Cross-sectional study of major depressive disorder692024
PRJNA449784human gut metagenome Raw sequence reads682019
PRJNA547591Cameroon, U.S. fecal V4 amplicon sequencing of 16S rRNA and shotgun sequencing672020
PRJNA604850Type 1 diabetes in pregnancy and changes in the composition and function of the gut microbiome662020
PRJNA781055Gut metagenomics in slow transit constipation662021
PRJDB14273Human gut and salivary microbiota before, during, and after fructooligosaccharide supplementation662024
PRJNA324129Human fecal microbiome before and after consumption of AH1206 - Raw sequence reads652016
PRJEB51776Disrupted intestinal microbiota contributes to the pathogenesis of anorexia nervosa642023
PRJNA432958FXR-Dependent Modulation of the Human Small Intestinal Microbiome by the Bile Acid Derivative Obeticholic Acid642018
PRJNA893406human gut metagenome Raw sequence reads642023
PRJNA1243897Gut microbiome of people consuming a sourdough-leavened croissant enriched with fiber622025
PRJNA876774Impact of varied stressful environmental conditions on human gut microbiota602023
PRJNA1004858Metagenome AS and Gut microbiota602026
PRJEB59709The gut metagenome harbors metabolic and antibiotic resistance signatures of established asthma592023
PRJNA588313Human gut microbiome and virome under antibiotic treatment Raw sequence reads592019
PRJEB42304Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowel Syndrome and Bile Acid Malabsorption592021
PRJNA637785Multi-donor FMT to treat adolescents with severe obesity (The Gut Bugs Trial)582021
PRJNA745329Fecal and colon mucosa sequencing of tubular adenoma, serrated, and polyp-free individuals582021
PRJNA890008Altered infective proficiency of the gut microbiome in COVID-19572022
PRJEB20800Gut resistome modulates resilience and recovery of gut microbiota after broad-spectrum antibiotic treatment572018
PRJNA690543Human Gut Microbiomes from Burkina Faso562021
PRJEB50555Targeted suppression of human IBD-associated gut microbiota commensals for treatment of intestinal inflammation562022
PRJNA1300320Association of metabolic pathways and antibiotic resistance gene dynamics with SARS-CoV-2 vaccine efficacy in PLWH552026
PRJNA400072Gut microbiome structure and metabolic activity in inflammatory bowel disease542018
PRJNA1456031Effects of selected contaminants on the human gut microbiome tested ex vivo542026
PRJNA487636An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel disease and rheumatoid arthritis: a cross-sectional study542018
PRJNA716780Mothers/children Metagenome532022
PRJNA928311Probiotics supplementation to ileostoma bacterial community cause dynamic increase in their resistance to perturbations and metabolic utilization532024
PRJNA686835Human gut microbiota Raw sequence reads from medication-naive individuals who are lean or abdominally obese subjects with and without T2D522021
PRJNA542578human gut metagenome Raw sequence reads512024
PRJNA1007579FECAL Raw sequence reads512024
PRJNA562766Fecal microbiome analysis of patients with chronic obstructive pulmonary disease512020
PRJDB37496Gut microbiome of 50 Japanese adults502025
PRJNA379741MECFS metagenomics502018
PRJEB28384Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation492019
PRJNA1135500Gut Virome in First-Episode Schizophrenia492024
PRJEB122858Disrupted Terminal Bilirubin Catabolism Links Lachnospiraceae Depletion to Inflammatory Bowel Disease482026
PRJNA813736Whole genome sequencing of the faecal microbiomes from healthy controls and patients with inflammatory bowel disease482022
PRJEB39813A metagenomic study of the oral (saliva) and Gut (stool) microbiome in subjects with Crohn's Disease.482021
PRJEB27005Gut metagenomes of rural populations in Cameroon482019
PRJEB27928Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.472018
PRJNA838648Healthy Human Stool Donors from Duchossois Family Institute at University of Chicago472022
PRJNA431482human gut metagenome Metagenome-Behcet's disease472018
PRJNA1135717Microbiome Sequencing of First-episode Schiozphrenia472024
PRJNA1206184Mediation of systemic exposure to the immunosuppressive drug Mycophenolate mofetil by the gut microbiome in kidney transplant patients472025
PRJEB6070Potential of fecal microbiota for early stage detection of colorectal cancer462014
PRJDB18359Gut microbiota of dietary intervention study452025
PRJNA1198725Human gut metagenome452025
PRJNA613947human gut metagenome Metagenome452020
PRJDB14457Gut microbiota of healthy Japanese adult442025
PRJNA675598Identification of unique bile acid metabolizing bacteria from the microbiome of centenarians442021
PRJEB60243Functional Alterations and Predictive Capacity of Gut Microbiome in Type 2 Diabetes442023
PRJNA674880Microbiota Restoration Reduces Antibiotic Resistant Bacteria Gut Colonization in Patients with Recurrent Clostridioides difficile Infection from the Open-Label PUNCH CD Study442020
PRJNA530971Gut microbiota-bile acid-interleukin 22 axis orchestrates polycystic ovary syndrome432019
PRJEB39661Changes in the microbiota across life: the existence of a core of microbial taxa and decoupling taxa.432023
PRJEB26089Impact-of-Vegetarian-Diet422018
PRJNA943232Raw sequence reads in young adults with major depression.422024
PRJNA891875Human gut Metagenome422023
PRJNA737472Microbiome sequencing of ulcerative colitis patients receiving fecal microbiota transplantation422022
PRJEB89526Shotgun Metagenomic Analysis of Gut Microbiome and Resistome Diversity in Indigenous Orang Asli Communities of Peninsular Malaysia422026
PRJEB63222Short-term intake of fiber-rich oat bran but not spelt bran lowers bacterial endotoxin levels and improved health parameters in healthy women402023
PRJNA851177Alteration of the gut microbiome through long-term macrolide therapy and associated changes in systemic immune and metabolic regulation402023
PRJNA1475610Shotgun metagenomic profiling of the gut microbiome in type 2 diabetes mellitus and healthy controls402026
PRJNA1090850Shotgun metagenome sequencing of fecal samples from healthy US adults402024
PRJEB13870Hypertension is one of the most prevalent cardiovascular diseases worldwide. Recent findings have identified a link between gut microbiota and blood pressure, yet the contributions of gut microbes and bacterial metabolites towards hypertension remain largely uncharacterized. We carried out metagenomic and metabonomics analyses, in combination with faecal microbiota transplantation, and elucidate that dysbiosis of gut microbiome triggers the pathogenesis of hypertension through altering the metabolic effects.402016
PRJNA511899Analysis of Intestinal Microbial Diversity and Function Gene Based on Single Cell Amplification Technique402019
PRJEB49168Singapore Platinum Metagenomes Project402021
PRJEB127029Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella402026
PRJNA349463Urban vs. Rural China Microbiome402017
PRJNA749919An optimized approach to the metagenomic population studies: from sample donation to community profiling392022
PRJNA588035Cross-sectional study of intestinal flora in Parkinson's patients in central China392021
PRJEB12449Reproducibility of associations between the human gut microbiome and colorectal cancer assessed in a patient population from Washington, DC, USA392016
PRJNA1503165Climate and One Health exposure gradients decouple antimicrobial resistance burden from resistome composition in the gut microbiome of healthy young adults from across the world392026
PRJEB53403PD Shotgun Metagenomics Data392022
PRJNA947684Metagenomic sequencing of human feces and enriched virus-like particles392023
PRJNA1067813C. difficile-associated mouse and human fecal metagenomes392025
PRJNA694018Probiotic intervention during ship voyage to Antarctica382021
PRJNA762199Metagenomic analysis of gut microbiota of people with depression disorders for determination of the composition of the marker genes.382021
PRJNA1306676Multiple body sites microbiome in women with Preeclampsia and their infants382026
PRJEB34103Brain-gut-axis-IBS and HC-metagenomic faecal samples382026
PRJNA1184213The microbiota-dependent effect of physical activity on Crohn's disease382025
PRJNA1142935human gut metagenome data of GDM and NGT pregnancies372024
PRJNA1267264Healthy Dairy Worker Longitudinal New Workers372025
PRJNA1210837Metagenomic sequencing of gut virus in heart failure patients372025
PRJNA1371390Human gut virome in ulcerative colitis362026
PRJNA268964Human Gut Microbiome Metagenome352015
PRJNA1499619Gut microbial characteristics of hospitalized patients with active ulcerative colitis and sarcopenia352026
PRJNA755720Differential effects of western and mediterranean-type diets on gut microbiota: a metagenomics and metabolomics approach352021
PRJNA1299468Gut Bacteria and Parkinson's disease342025
PRJNA1516599Dietary protein source impacts the gut microbiota in healthy humans342026
PRJEB76849Gut microbiome alterations in Alzheimers disease _WF-BEAM342024
PRJNA1283919STOP-COLITIS Metagenomic Sequencing Data342025
PRJNA1067529Gut microbial characteristics of patients with hyperlipidemia in plateau environment332024
PRJEB86785The Antibiotic Resistance in the Microbiome – Oxford332025
PRJEB30796We analysed five different techniques to isolate phages from human adult faeces332019
PRJNA604820Skin metagenome from antibiotics treated healthy human subjects322022
PRJNA1171384Deciphering the functional landscape of gut microbiome of an indigenous tribal community in India322026
PRJNA278393Metagenome sequencing of the Hadza hunter-gatherer gut microbiota.322015
PRJNA1148144Biosignatures of late-onset extraintestinal bacterial infections322025
PRJNA909041GutAlive(R) enables DNA-based microbiome analysis without disrupting the original composition and diversity322023
PRJNA883179Longitudinal study of gut microbiome in obsessive-compulsive disorder322023
PRJEB72525Gut microbiome samples from a cohort of CRC patients in two hospitals in Prague and Plzen, Czech Republic.322025
PRJEB21741Metagenomic analysis of the DNA virome of faeces from healthy adult Wayampi Amerindians.312018
PRJNA1192958Human gut microbiome of healthy and T2D cohorts of India312026
PRJNA392180Seasonal Cycling in the Gut Microbiome of the Hadza Hunter-Gatherers of Tanzania312017
PRJNA401385Human gut microbiota Raw sequence reads312017
PRJNA1113191Gut microbiome analysis of health screening participants at Seoul National University Hospital312025
PRJNA531203Human gut metagenome Metagenome312020
PRJNA1320802A key microbiota triggering emotional disorders in IBS.312026
PRJNA759733Synbiotic intervention with Lactobacilli, Bifidobacteria, and inulin in healthy volunteers302022
PRJNA911046Multicenter evaluation study of gut microbiome profiling by next-generation sequencing302023
PRJNA981159Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans302023
PRJNA905731Gut microbial profiling identifies characterization of Non-Obstructive Azoospermia Men302024
PRJNA597839A metagenome-wide association study of gut microbiota, visceral fat and sleeve gastrectomy302020
PRJNA939268Effect of AWE diet on the gut microbiome302023
PRJEB126105Co-biotic Formulations Mediate Microbiome Function and Composition302026
PRJEB21612Alterations of the gut microbiome in hypertension302022
PRJNA895487Multi-omic gut microbiomes of autistic children and their typically developing siblings302023
PRJNA813705Evaluation of gut microbiota composition in patients with acute myeloid leukemia302024
PRJEB10878Metagenomic analysis of fecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer302015
PRJNA961076Identification of taxonomic changes in feces bacteriome associated with colorectal polyps and cancer: potential biomarkers for early diagnosis302023
PRJNA1365657Yeast protein fermentation modulates barrier in older males ex vivo302025
PRJNA1023559Metabolomics and gut metagenomics profile of the healthy adults on consumption of whey protein supplemented with enzymes-probiotics blend.302024
PRJNA1020557Study of amino acids absorption and gut microbiome on consumption of pea protein blended with enzymes-probiotics supplement302024
PRJNA447983Whole-metagenome shotgun sequencing of two Italian fecal CRC cohorts302018
PRJNA792685Metagenome sequence analysis of the distal gut virome in healthy indian adults302022
PRJNA1199756Gut microbiota-mediated conversion of mangiferin to norathyriol alters short chain fatty acid and urate metabolism302025
PRJNA1056769Fecal of bronchiectasis Metagenome292025
PRJNA445968Innate, Transcriptomic, and Microbiomic Correlates of Tuberculosis Infection and Disease292018
PRJNA705895Fecal microbiota of donors and RCDI patients before and after FMT292021
PRJEB41867Methane emission of humans is driven by a uniform archaeome, dietary parameters and formate availability.292021
PRJNA498332Comparison of faecal virome composition in cystic fibrosis patients vs. a healthy cohort292018
PRJEB31790Drug metabolism by 28 human gut communities282019
PRJEB55711SLE virome282022
PRJDB17221Horizontal gene transfer shapes pathogenic bacteria in multiple sclerosis_fecal metagenome282024
PRJEB17784The fecal microbiota in L-DOPA naive PD patients282017
PRJNA939937Effect of bile acids on intestinal bacteria282024
PRJNA1125836Gut microbiome obesity index, a new analytical part of the metagenomics workflow to evaluate gut dysbiosis in obese humans282024
PRJNA1247940Shotgun Metagenomic Sequences of Host-Associated Gut Microbiomes in Gestational Diseases282025
PRJEB53551FMT alleviates peripheral neuropathy in patients with diabetes mellitus272024
PRJEB15371The gut microbiome in Crohn's disease and modulation by exclusive enteral nutrition272016
PRJNA624763Shotgun metagenomics of human gut microbiota in China high longevity area272020
PRJNA818062the gut microbiome metagenomic of Tibetan subjects272023
PRJNA307231Human feces metagenome 16s rDNA sequencing272018
PRJEB18780Exploring associations between the gut microbiota and colonic inflammation and assessing sequential changes during exclusive enteral nutrition (EEN) for children with Crohn's disease and comparing them to healthy cohorts as well as their relatives272017
PRJNA340216Gut microbiota and metagenomic diversity of omnivore, vegetarian and vegan healthy subjects272016
PRJEB42013Non-invasive, robust and specific fecal microbiota-based screening for the early detection of PDAC.272022
PRJDB17227Correlation analysis between EPS hydrolase, glycolysis, and SCFA production in human feces.262024
PRJNA1074507Acetate-producing Prevotella copri aggravates schizophrenia behavior by modulating serotonin metabolism262024
PRJEB52189Preeclampsia metagenome dataset252022
PRJNA938297Eubacterium rectale differentiates gut microbiota among psoriasis and psoriatic arthritis patients252024
PRJNA289586Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus242016
PRJNA713865Probiotics improved quality of life in stressed adults242022
PRJNA1160256The effects of selected food components and additives on the human gut microbiome242025
PRJEB80379Fibromyalgia and gut microbiome242024
PRJNA648321Comparison of DNA extraction protocols from stool samples242022
PRJEB28543Gut microbiome of treatment-naïve MS patients of different ethnicities early in disease course.242019
PRJNA1473304Gut Microbiota in Adenomyosis patients232026
PRJNA1044118Human oral and gut microbiome in first episode psychosis patients232024
PRJNA962059Lewy Body Dementia Microbiome232024
PRJNA615842Alteration in gut microbiota composition and functional relevance in subclinical carotid atherosclerosis in the general popolation232021
PRJNA689476Metagenomic Sequencing of Bacteria from Subjects with CD and AS232022
PRJNA906167Metabolic response of intestinal microbiota to guar guam consumption222023
PRJNA529124Metagenomic sequencing of stool samples from Ghanaian individuals222019
PRJNA1367514Shotgun metagenomic sequencing of fecal specimens from 30 paired human sample222025
PRJEB58815PREDIRES_phage222023
PRJDB15956Shotgun data in the gut of Parkinson's disease222023
PRJNA524170Resistant microbiome underlies antibiotic therapy in pouchitis222019
PRJNA504891Metagenomic sequencing of stool samples from Ethiopian individuals222018
PRJNA896336Shotgun metagenomics of treatment-naive rheumatoid arthritis (RA) patients with new-onset RA.222022
PRJNA926386Phagestorage222023
PRJNA389927Viral and Bacterial Communities of Colorectal Cancer222017
PRJNA602732Ecological and evolutionary alteration in the GD intestinal microbiome part03222020
PRJDB12607gut microbiota composition within multi-regional stool samples from a healthy adult212023
PRJEB29373Metagenomics wide association studies on multi-autoimmune diseases.( F16HTSNCWLJ1153-F16FTSNCWLJ0140)212018
PRJNA649273KiSMi Kidney stone patients - gut samples212020
PRJNA1084251Tryptophan metabolites in fecal samples from healthy humans212024
PRJNA800662Human gut metagenomic sequencing from Sjogren Syndrome, dry eye and healthy control patients202023
PRJNA626062Fecal microbiota transplant therapy in type 2 diabetes patients.202020
PRJEB35961Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing202017
PRJNA720271Potential of fecal microbiota to predict detoxification and reactivation of dietary carcinogens202025
PRJNA1308818Modelling gut and oral microbiome transmission among cohabitants202026
PRJNA602729Ecological and evolutionary alteration in the GD intestinal microbiome part01202020
PRJNA999028Intestinal microbial community of gallstone subjects202023
PRJNA705217Gut metagenomes of patients with post-infection irritable bowel syndrome202022
PRJNA602731Ecological and evolutionary alteration in the GD intestinal microbiome part02202020
PRJEB62571Changes in the microbiota across life: the existence of a core of microbial taxa and decoupling taxa.202023
PRJNA1056458Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohort202024
PRJEB55787Associations of the Intestinal Microbiome and HLA-B27-associated anterior uveitis202025
PRJEB33194Metagenomics analysis of biopsy-derived colonic and terminal ileal mucosa associated microbiota in healthy individuals from a population-based study202019
PRJNA703034Metagenomics of Stool from ICU Patients182022
PRJNA665854WGS of feces and saliva of pancreatic cancer patients182020
PRJNA300602Human gut microbiome raw sequence reads182017
PRJNA816918GENIUS Study, Shotgun Metagenomes from Fecal Samples of Healthy Adults182025
PRJNA1254622Patients with pelvic irradiation182026
PRJNA1250239Comparison of methods for the optimal recovery of the human fecal virome182026
PRJNA1219209The W.O.L.F.P.A.C.K. Study182025
PRJEB42155UCSD IBD 200 Patient Cohort Multi-omic Project182023
PRJNA526822Fecal samples of herders in different regions172020
PRJEB53209Fecal metagenome dataset of 48 healthy women172022
PRJNA1145581Gut Microbiome profile of Lynch syndrome mutations172025
PRJNA373879Healthy human fecal metagenomes variably reactivate Irinotecan active metabolite172017
PRJNA954397Homo sapiens Phenotype or Genotype172023
PRJNA510036Fecal transplant influence on healthy volunteers172018
PRJNA742740Gut microbiota of Kidney Stone patients and live-in partners172021
PRJNA1227720Healthy adult feces samples162025
PRJNA1090271Whole Genome Metagenomics of Human Fecal Sample: Melioidosis162025
PRJNA858062Homo sapiens Raw sequence reads162022
PRJNA838841Gut bacterial tyrosine decarboxylase activity impacts the levodopa pharmacokinetics in patients with Parkinsons disease162023
PRJNA297252Intestinal microbiota dynamics in hospitalized patients162015
PRJNA299502Human Gut Microbiome Metagenome162015
PRJNA314481Bacteria and human colon samples from human gut Metagenome162016
PRJNA438847Metagenomic analysis of adult CF and control stool162019
PRJNA905672Metagenomic data of gut microbiome from tunisian CRC patients162023
PRJNA1093500Gut microbiota sequencing in patients with craniopharyngioma and healthy controls152025
PRJNA1109584Metagenomic sequencing of stool samples from healthy human volunteers from the EON study152025
PRJDB8956An efficient and accurate reconstruction of the full-length phage genomes by chimera-free long-read metagenomics of the human gut virome152021
PRJNA1258603Human gut microbiome of Healthy and T2D individuals from Nagaland, India152025
PRJEB40628gut metagenome of HC, IBS, DEP and COMO152020
PRJNA624223Gut microbiome alterations and longitudinal kinetics in COVID-19 patients152020
PRJEB19090Potential and active functions in the gut microbiota of a healthy human cohort152017
PRJNA561510Reconstruction of ancient microbial genomes from the human gut152021
PRJNA573821Whole Meta-genome shotgun sequencing of stool samples from human treated with antibiotics152020
PRJNA1517182Fecal metagenomic sequencing152026
PRJNA634145human metagenome Raw sequence reads142021
PRJEB57228Dietary intervention of people with Parkinson's disease142024
PRJNA983946Human gut metagenome of ulcerative colitis and healthy stool samples from Northern India142024
PRJEB112132Family cohort with central areolar choroidal dystrophy142026
PRJEB70916Whole Metagenome Sequencing of colo-rectal cancer in Lynch Syndrome Patients132024
PRJNA475599Fecal transplant for ulcerative colitis132019
PRJNA832737gut metagenome of subjects with GID upon milk consumption132022
PRJNA1461404Insights into the effects of gut microbiota and circulating metabolites on oral cancer132026
PRJNA1184021FMT trial132025
PRJNA808806human gut metagenome Raw sequence reads122023
PRJNA822996Gut microbiome dysbiosis in low back pain patients with/without modic changes and Healthy controls122026
PRJNA1475489Brain Health and the Gut Microbiome (bMicrobiome Study)122026
PRJNA1438274Proximity-ligation metagenomics of rCDI and Cirrhosis Patients122026
PRJEB54728Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China122022
PRJNA1377628Decoding the microbiome and resistome of advanced chronic liver disease through long-read metagenomics122026
PRJNA356544Hypervariable loci in the human gut virome122016
PRJNA1160072Chron fermentation122024
PRJEB88320Long read metagenomics reveals phage dynamics in the human gut microbiome122025
PRJEB7774Gut microbiome development along the colorectal adenoma-carcinoma sequence122015
PRJEB62783Synchronized response of CD4+ T cells to short-term dietary changes leads to windows of mucosal and systemic immune depression122023
PRJNA1405914Gut microbiota-derived 5-hydroxyindoleacetic acid drives macrophage-dependent cardiac remodeling through the AHR-NFATC2-ITGA4 axis122026
PRJDB18384Gut microbiota of healthy Japanese adult112025
PRJNA1395841Metagenomics Reveals Gut Microbiota Dysbiosis in Chinese ALS Patients112026
PRJNA692830Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on antiretroviral therapy112021
PRJNA762484Gut microbiota in patients with Parkinson disease112022
PRJNA1441104Gut microbiome structure and function in patients with rheumatoid arthritis complicated by interstitial lung disease112026
PRJNA928744Gut microbiota composition of patients in MIMic cohort112023
PRJEB123871Microbiome‐Based Modeling of CAR‐T Therapy Response in Lymphoma: Insights From Shotgun Metagenomics Sequencing102026
PRJNA1225217Fecal metagenomics analysis of patients with Vogt-Koyanagi-Harada disease and acute retinal necrosis102026
PRJNA1135972Long-read Nanopore sequencing reveals multiple modes of capsid-mediated mobilisation of bacterial genomic DNA102024
PRJNA391226next generation sequencing of feces in HIV-1 patients Raw sequence reads102017
PRJNA413356Mycobacterium tuberculosis Genome sequencing and assembly102017
PRJNA414479Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signaling102017
PRJNA637175Gut microbiome of Thai adults102021
PRJNA1001944Breast cancer but not the menopausal status is associated with small changes of the gut microbiota102024
PRJNA767321Human small intestine metagenomes from a pilot study on segmented filamentous bacteria102021
PRJNA649316Hi-C and metagenomic sequencing of neutropenic patient microbiomes102020
PRJEB53401PD Shotgun Metagenomics - TBC102022
PRJEB51945Gut microbial DL-endopeptidase protects Crohn’s disease via NOD2 pathway102024
PRJNA596624Human gut metagenome102024
PRJNA637878Precise quantification and tracking of gut bacterial strains following fecal transplantation demonstrates long-term stable engraftment and predicts outcome102021
PRJNA941151Identification of Gut Microbiota and Metabolites Signature in Patients With epilepsy102025
PRJNA685581hyptertensive gut metagenome in patients and mice92023
PRJNA353598viral metagenome Metagenome92017
PRJNA806955metagenomics for IPH patients92022
PRJNA613834Functional Microbial Responses to Alcohol Abstinence in Patients with Alcohol Use Disorder92020
PRJNA1195215Human gut metagenome92025
PRJNA1033532Evaluating the impact of pharmaceuticals on the human gut microbiome Raw sequence reads92024
PRJNA389280Human gut metagenome and metatranscriptome in the inflammatory bowel disease (iHMP/HMP2)92017
PRJNA939026Gut microbiota associated with Lynch syndrome in Druze communities in Israel92023
PRJNA566436human gut metagenome92019
PRJNA896226Analysis of the Fecal Metagenome in Long Term Survivors of Pancreas Cancer82023
PRJNA1134113SpaceX Inspiration4 Stool Metagenome Profiling82024
PRJDB5860Asian Microbiome Project82025
PRJNA428202healthy human gut metagenomics82018
PRJNA1273449Gut Microbiota Are Associated with Lymph Node Tuberculosis82025
PRJNA866162Human gut microbial consortia that are specifically evolved and selected by the arabinoxylan polysaccharide from sorghum bran82022
PRJDB16532Generic sample from human gut metagenome82024
PRJNA1285573Homo sapiens1 Raw sequence reads82025
PRJNA75964216s and shotgun sequencing from human faecal82021
PRJNA1057679Integrative analysis of serum and fecal metabolome and microbiome that herald a flare in Crohn Disease82026
PRJNA905328gut microbes sequencing72023
PRJNA1070670Pregnant vs non-pregnant gut microbiome metagenomic sequencing72024
PRJNA1374193Exploratory observational study of the fecal microbiome of patients with keratoconus72025
PRJEB38258The long-term impact of distal feeding on patients with stoma72025
PRJNA686769Altered enteric virome in rheumatoid arthritis72025
PRJNA446061Fecal Metagenome72018
PRJNA759070metagenomic sequencing in patients with GHPA (growth hormone secreting pituitary adenoma)72022
PRJNA592261Infant virome during the first year of life72020
PRJNA382011Metagenomics-Guided Pathogen Discovery in Travelers' Diarrhea72017
PRJNA397219Gut metagenomes of patients with colorectal cancer62017
PRJNA982264Investigating the Bacterial Gut Microbiome of Diverse Egyptian Populations62024
PRJNA971196Healthy Dairy Worker Metagenomics Study62023
PRJNA1096686A comparative analysis of Parkinson's disease, inflammatory bowel disease, and control gut microbiomes with shotgun metagenomics62024
PRJNA881055An interdisciplinary approach to characterize peanut-allergic patients - first data from the FOOD@ consortium62022
PRJNA275687HUMAN GUTMICROBIOTA Metagenome62016
PRJNA1043851Gut Microbiome Characteristics of Hypothyroidism in Early Pregnancy Detected by 16S rRNA Amplicon Sequencing and Shotgun Metagenomics62023
PRJEB98012Creeping Fat52025
PRJNA904560Essential tremor triggered by reduction of gut bacterial-derived GABA is ameliorated by supplementary of high GABA-producing Lactobacillus plantarum L552023
PRJNA666684A metagenomic study of CVID in humans52021
PRJNA499081Gut bacteriophage community of metabolic syndrome subjects during fecal microbial transplant52019
PRJDB18387Gut microbiota of healthy Japanese adult52025
PRJNA386422Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses52018
PRJEB53649Equol producers and non-producers52023
PRJNA736213Profiling the gut microbiota of Amyotrophic Lateral Sclerosis (ALS) patients52021
PRJNA705695Gut metagenomes of patients and mice with post-infection irritable bowel syndrome52022
PRJEB12357Durable coexistence of donor and recipient strains after fecal microbiota transplantation52016
PRJNA579180Microbiome Profile in Irritable Bowel Syndrome and Healthy Controls from Mexican individuals52020
PRJNA826539Metagenomic shotgun sequencing of endocervical, vaginal and rectal samples among Fijian women with and without Chlamydia trachomatis52022
PRJNA1217924Human faecal sample shotgun metagenomics42025
PRJNA1221292Plasma Exosomal miRNA Expression and Gut Microbiota Dysbiosis Are Associated with Cognitive Impairment in Alzheimer's Disease.42025
PRJNA298489Library preparation methodology can influence genomic and functional predictions in human microbiome research42015
PRJNA380276Human gut metagenome, marine sediment metagenome, and synthetic metagenome42018
PRJNA360177The gut microbiome before and after simulated space capsule life42017
PRJEB102113Mapping of the Gut Metagenome42026
PRJEB95899Metagenomic Analysis of the Human Gut Virome Reveals Functional Signatures and Viral Stability in Diarrheal and Non-Diarrheal Individuals42025
PRJNA1300398Impact of dolutegravir on the gut microbiome and metabolic pathways in PLWH32026
PRJNA593787Sulfoquinovose is a selective nutrient for bacteria in the human gut32020
PRJNA321218human gut and groundwater harbor non-photosynthetic bacteria32016
PRJNA999191Metagenomic analysis of the BR135 top-10 ultramarathoner32023
PRJNA689204Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M32021
PRJNA1235679Gut Microbiome Shotgun Metagenomic Sequencing in Survivors of Acute Lymphoblastic Leukemia Compared to Siblings32025
PRJEB33098Colonbiome pilot: 9 stools, sequenced by shotgun22019
PRJNA713013human stool Metagenome22021
PRJNA643802FMT for diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma22020
PRJNA600008Dysbiosis-induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation22020
PRJNA679346Whole-metagenome shotgun sequencing of human feces22021
PRJNA855302Homo sapiens Raw sequence reads22022
PRJNA312222Genome reconstructions from human gut metagenomes22016
PRJNA336061Prevotella enterotype related metagenome sequencing22017
PRJNA911758Studying Intestinal Microbiomes by Nanopore Sequencing22023
PRJNA565268gut metagenome22019
PRJNA525458Fecal transplant in children with Clostridioides difficile22020
PRJNA414540human gut metagenome Raw sequence reads22017
PRJNA1006039Investigation of the Phosphorothioate Landscape in the Human Gut Microbiome22024
PRJNA356225human gut metagenome Metagenome12016
PRJNA786875Intestinal virome in alcohol use disorder and abstinence Raw sequence reads12022
PRJNA1521393First clinical cases of effective sterile fecal filtrate transfer for ulcerative colitis treatment: microbiome and virome shifts12026
PRJNA421352Gut microbiome in Children with Acute Lymphoblastic Leukemia (ALL)12017
PRJNA1230534Metagenome of keloid patients and control patients12025
PRJNA287878the duodenal gut microbiome from obese and healthy subjects12015
PRJNA379120Colonization, succession and evolution of the earliest human gastrointestinal microbiome12018
PRJNA486009Genome diversity of pathogenic Escherichia coli in Ecuador12019
PRJNA743023Human FMT samples Raw sequence reads12021
PRJNA322188Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body Sites12017
PRJEB38742Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology12020
PRJEB47909FMT datasets of patients with recurrent Clostridioides difficile infection (rCDI), inflammatory bowel disease (IBD), and colonization from multi-drug resistant bacteria (MDRB)12022
PRJEB47976Alzheimer signature in intestinal microbiome: Results from the AlzBiom study.12022
PRJEB50473PacBio HiFi sequencing of a human fecal metagenome12022
PRJNA943491Colorectal RNA12023
PRJNA798244HiFi Metagenomic Sequencing Enables Assembly of Accurate Circularized Genomes of Long and Uncultured Human Gut Microbiota12022

References